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* checking for file 'aCGH/DESCRIPTION' ... OK
* preparing 'aCGH':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/work-area/1.8d/tmpdir/Rinst377669055


---------- Making package aCGH ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making hmm.d from hmm.cpp
g++  -g3 -Id:/biocbld/R-2.3.0/include -Wall -O2   -c hmm.cpp -o hmm.o
windres --include-dir d:/biocbld/R-2.3.0/include  -i aCGH_res.rc -o aCGH_res.o
g++  -shared -s  -o aCGH.dll aCGH.def hmm.o aCGH_res.o  -Ld:/biocbld/R-2.3.0/bin -lm  -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: cluster
Loading required package: survival
Loading required package: splines
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: sma
  installing demos
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'aCGH'
     Formats: text html latex example chm 
  aCGH                              text    html    latex   example chm
  aCGH.process                      text    html    latex   example chm
  aCGH.read.Sprocs                  text    html    latex   example chm
  aCGH.test                         text    html    latex   example chm
  clusterGenome                     text    html    latex   example chm
  colorectal                        text    html    latex   example chm
  computeSD.func                    text    html    latex           chm
  fga.func                          text    html    latex   example chm
  find.genomic.events               text    html    latex           chm
  find.hmm.states                   text    html    latex   example chm
  findAber.func                     text    html    latex           chm
  findAmplif.func                   text    html    latex           chm
  findOutliers.func                 text    html    latex           chm
  findTrans.func                    text    html    latex           chm
  gainLoss                          text    html    latex   example chm
  heatmap                           text    html    latex   example chm
  human.chrom.info.Jul03            text    html    latex           chm
  human.chrom.info.May04            text    html    latex           chm
  impute.HMM                        text    html    latex   example chm
  impute.lowess                     text    html    latex   example chm
  mergeFunc                         text    html    latex           chm
  mergeLevels                       text    html    latex   example chm
  plotFreqStat                      text    html    latex   example chm
  plotGenome                        text    html    latex   example chm
  plotHmmStates                     text    html    latex   example chm
  plotSummaryProfile                text    html    latex   example chm
  states.hmm.func                   text    html    latex           chm
  summarize.clones                  text    html    latex   example chm
  threshold.func                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\work-area\1.8d\madman\Rpacks\aCGH\chm\aCGH.chm





Compile time: 0 minutes, 0 seconds

30	Topics

248	Local links

0	Internet links

1	Graphic





Created d:\biocbld\work-area\1.8d\madman\Rpacks\aCGH\chm\aCGH.chm, 73,197 bytes

Compression decreased file by 85,828 bytes.

  adding MD5 sums

* DONE (aCGH)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'aCGH_1.6.0.tar.gz'