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| Package: aCGH |
| Version: 1.6.0 |
| Command: D:\biocbld\R-2.3.0\bin\R.exe CMD INSTALL --build aCGH_1.6.0.tar.gz |
| RetCode: 0 |
| Time: 34.5 seconds |
| Status: OK |
| PackageFile: aCGH_1.6.0.zip |
Using auto-selected zip options 'aCGH-ZIPDATA=zip aCGH-HELP=ziponly'
---------- Making package aCGH ------------
adding build stamp to DESCRIPTION
making DLL ...
making hmm.d from hmm.cpp
g++ -g3 -ID:/biocbld/R-2.3.0/include -Wall -O2 -c hmm.cpp -o hmm.o
windres --include-dir D:/biocbld/R-2.3.0/include -i aCGH_res.rc -o aCGH_res.o
g++ -shared -s -o aCGH.dll aCGH.def hmm.o aCGH_res.o -LD:/biocbld/R-2.3.0/bin -lm -lR
... DLL made
installing DLL
installing R files
save image
Loading required package: cluster
Loading required package: survival
Loading required package: splines
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: sma
installing demos
installing inst files
installing data files
installing man source files
installing indices
zipping data
installing help
>>> Building/Updating help pages for package 'aCGH'
Formats: text html latex example chm
aCGH text html latex example chm
aCGH.process text html latex example chm
aCGH.read.Sprocs text html latex example chm
aCGH.test text html latex example chm
clusterGenome text html latex example chm
colorectal text html latex example chm
computeSD.func text html latex chm
fga.func text html latex example chm
find.genomic.events text html latex chm
find.hmm.states text html latex example chm
findAber.func text html latex chm
findAmplif.func text html latex chm
findOutliers.func text html latex chm
findTrans.func text html latex chm
gainLoss text html latex example chm
heatmap text html latex example chm
human.chrom.info.Jul03 text html latex chm
human.chrom.info.May04 text html latex chm
impute.HMM text html latex example chm
impute.lowess text html latex example chm
mergeFunc text html latex chm
mergeLevels text html latex example chm
plotFreqStat text html latex example chm
plotGenome text html latex example chm
plotHmmStates text html latex example chm
plotSummaryProfile text html latex example chm
states.hmm.func text html latex chm
summarize.clones text html latex example chm
threshold.func text html latex example chm
zipping help files
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\work-area\1.8d\madman\Rpacks\R.INSTALL\aCGH\chm\aCGH.chm
Compile time: 0 minutes, 0 seconds
30 Topics
248 Local links
0 Internet links
1 Graphic
Created d:\biocbld\work-area\1.8d\madman\Rpacks\R.INSTALL\aCGH\chm\aCGH.chm, 73,199 bytes
Compression decreased file by 85,826 bytes.
adding MD5 sums
packaged installation of package 'aCGH' as aCGH_1.6.0.zip
* DONE (aCGH)