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Command output

* checking for file 'RMAGEML/DESCRIPTION' ... OK
* preparing 'RMAGEML':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/work-area/1.8d/tmpdir/Rinst764082202


---------- Making package RMAGEML ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  making DLL ...
making rmageml.d from rmageml.c
gcc  -IC:/progra~1/java/jdk1.5.0_01/include -IC:/progra~1/java/jdk1.5.0_01/include/win32 -Id:/biocbld/R-2.3.0/include -Wall -O2   -c rmageml.c -o rmageml.o
rmageml.c: In function `arji_createJVM':
rmageml.c:61: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `destroyOM':
rmageml.c:88: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `newRMAGESTK':
rmageml.c:105: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `importFeatures':
rmageml.c:130: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `getGridDimensions':
rmageml.c:165: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `selectQTypesDeriv':
rmageml.c:207: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `getSizeDED':
rmageml.c:241: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `selectQTypes':
rmageml.c:291: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `getExternalData':
rmageml.c:345: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `getQuantitationTypes':
rmageml.c:390: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `getQTypeDescription':
rmageml.c:428: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `createNewQTDim':
rmageml.c:460: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `addQuantitationTypeInfo':
rmageml.c:486: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `createNewMBASet':
rmageml.c:521: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `setMBA':
rmageml.c:545: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `updateMAGEML':
rmageml.c:578: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `writeMAGEML':
rmageml.c:625: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `getVoidArrayInt':
rmageml.c:655: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `getVoidArrayStr':
rmageml.c:690: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `getVoidStr':
rmageml.c:724: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `getVoidVoid':
rmageml.c:747: warning: dereferencing type-punned pointer will break strict-aliasing rules
rmageml.c: In function `destroyOM':
rmageml.c:91: warning: control reaches end of non-void function
rmageml.c: At top level:
rmageml.c:17: warning: 'JavaMethod_type_tag' defined but not used
windres --include-dir d:/biocbld/R-2.3.0/include  -i RMAGEML_res.rc -o RMAGEML_res.o
gcc  -shared -s  -o RMAGEML.dll RMAGEML.def rmageml.o RMAGEML_res.o  -Ld:/biocbld/R-2.3.0/bin -LC:/progra~1/java/jdk1.5.0_01/jre/bin/client -ljvm  -lR
d:\usr\MinGW\bin\..\lib\gcc\mingw32\3.4.2\..\..\..\..\mingw32\bin\ld.exe: cannot find -ljvm
collect2: ld returned 1 exit status
make[3]: *** [RMAGEML.dll] Error 1
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-RMAGEML] Error 2
*** Installation of RMAGEML failed ***

Removing 'D:/biocbld/work-area/1.8d/tmpdir/Rinst764082202/RMAGEML'
 ERROR
Installation failed.
Removing 'D:/biocbld/work-area/1.8d/tmpdir/Rinst764082202'