BioC 1.8: BUILD report for RBGL on lemming

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Package: RBGL
Version: 1.8.1
Command: D:\biocbld\R-2.3.0\bin\R.exe CMD build RBGL
RetCode: 0
Time: 266.0 seconds
Status: OK
PackageFile: RBGL_1.8.1.tar.gz
Command output

* checking for file 'RBGL/DESCRIPTION' ... OK
* preparing 'RBGL':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/work-area/1.8d/tmpdir/Rinst712434552


---------- Making package RBGL ------------
untarring boost include tree...
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making bbc.d from bbc.cpp
making cliques.d from cliques.cpp
making hcs.d from hcs.cpp
making incrConnComp.d from incrConnComp.cpp
making interfaces.d from interfaces.cpp
making layout.d from layout.cpp
making minST.d from minST.cpp
making mincut.d from mincut.cpp
making ordering.d from ordering.cpp
making shortestPath.d from shortestPath.cpp
making sna.d from sna.cpp
making wavefront.d from wavefront.cpp
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2 -IboostIncl   -c bbc.cpp -o bbc.o
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2 -IboostIncl   -c cliques.cpp -o cliques.o
cliques.cpp: In function `void print_one_clique(oneCliqueType&)':
cliques.cpp:110: warning: comparison between signed and unsigned integer expressions
cliques.cpp: In function `void print_all_cliques(allCliquesType&, char*)':
cliques.cpp:118: warning: comparison between signed and unsigned integer expressions
cliques.cpp: In function `void extend_v2(Graph_ud&, std::vector >&, std::vector >&, int, int, int&, allCliquesType&)':
cliques.cpp:138: warning: 'fixp' might be used uninitialized in this function
cliques.cpp:139: warning: 'pos' might be used uninitialized in this function
cliques.cpp:139: warning: 's' might be used uninitialized in this function
cliques.cpp: At global scope:
cliques.cpp:116: warning: 'void print_all_cliques(allCliquesType&, char*)' defined but not used
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2 -IboostIncl   -c hcs.cpp -o hcs.o
hcs.cpp: In function `void output_graph_labels(const V_Label&, const char*)':
hcs.cpp:27: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `void build_subgraph(Cluster&, const Graph_ud&, const V_Label&, Graph_ud&, V_Label&)':
hcs.cpp:62: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `void remove_vertices(int, const Graph_ud&, const V_Label&, Graph_ud&, V_Label&)':
hcs.cpp:117: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `dst cluster_distance(const Graph_ud&, V_Label&, int, V_Label&)':
hcs.cpp:134: warning: comparison between signed and unsigned integer expressions
hcs.cpp:138: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `void adopt_singleton(const Graph_ud&, V_Label&, ClusterResult&)':
hcs.cpp:206: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `void remove_clusters(ClusterResult&, const Graph_ud&, const V_Label&, Graph_ud&, V_Label&)':
hcs.cpp:248: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `void HCS_internal(const Graph_ud&, V_Label&, ClusterResult&)':
hcs.cpp:288: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `SEXPREC* HCS_loop(Graph_ud&, V_Label&)':
hcs.cpp:363: warning: comparison between signed and unsigned integer expressions
hcs.cpp:393: warning: comparison between signed and unsigned integer expressions
hcs.cpp:397: warning: comparison between signed and unsigned integer expressions
hcs.cpp:353: warning: unused variable 'found_new_cluster'
boostIncl/boost/graph/edge_connectivity.hpp: In function `typename boost::graph_traits::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list, OutputIterator = std::back_insert_iterator]':
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' might be used uninitialized in this function
hcs.cpp: At global scope:
hcs.cpp:25: warning: 'void output_graph_labels(const V_Label&, const char*)' defined but not used
hcs.cpp:33: warning: 'void output_graph(const Graph_ud&, const char*)' defined but not used
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2 -IboostIncl   -c incrConnComp.cpp -o incrConnComp.o
incrConnComp.cpp: In function `SEXPREC* BGL_incr_comp_internal(SEXPREC*, SEXPREC*, SEXPREC*, E_IC_METHOD)':
incrConnComp.cpp:67: warning: comparison between signed and unsigned integer expressions
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2 -IboostIncl   -c interfaces.cpp -o interfaces.o
interfaces.cpp: In function `SEXPREC* BGL_articulation_points_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
interfaces.cpp:311: warning: comparison between signed and unsigned integer expressions
interfaces.cpp: In function `SEXPREC* BGL_astar_search_D(SEXPREC*, SEXPREC*, SEXPREC*)':
interfaces.cpp:440: warning: 'ansList' might be used uninitialized in this function
interfaces.cpp: In function `SEXPREC* BGL_tsort_D(SEXPREC*, SEXPREC*, SEXPREC*)':
interfaces.cpp:67: warning: 'tsout' might be used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp: In function `typename boost::graph_traits::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator > >]':
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' might be used uninitialized in this function
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2 -IboostIncl   -c layout.cpp -o layout.o
layout.cpp: In function `SEXPREC* BGL_gursov_atun_layout(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
layout.cpp:219: warning: unused variable 'w'
layout.cpp:220: warning: unused variable 'h'
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2 -IboostIncl   -c minST.cpp -o minST.o
minST.cpp: In function `SEXPREC* BGL_PRIM_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
minST.cpp:99: warning: comparison between signed and unsigned integer expressions
minST.cpp:103: warning: comparison between signed and unsigned integer expressions
minST.cpp:93: warning: unused variable 'vlist'
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2 -IboostIncl   -c mincut.cpp -o mincut.o
boostIncl/boost/graph/edge_connectivity.hpp: In function `typename boost::graph_traits::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator > >]':
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' might be used uninitialized in this function
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2 -IboostIncl   -c ordering.cpp -o ordering.o
ordering.cpp: In function `SEXPREC* BGL_king_ordering(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
ordering.cpp:172: warning: unused variable 'delta'
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2 -IboostIncl   -c shortestPath.cpp -o shortestPath.o
shortestPath.cpp: In function `SEXPREC* BGL_bellman_ford_shortest_paths(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
shortestPath.cpp:79: warning: unused variable 'j'
shortestPath.cpp: In function `SEXPREC* BGL_floyd_warshall_all_pairs_shortest_paths_D(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
shortestPath.cpp:180: warning: unused variable 'V'
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2 -IboostIncl   -c sna.cpp -o sna.o
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2 -IboostIncl   -c wavefront.cpp -o wavefront.o
windres --include-dir d:/biocbld/R-2.3.0/include  -i RBGL_res.rc -o RBGL_res.o
g++  -shared -s  -o RBGL.dll RBGL.def bbc.o cliques.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o shortestPath.o sna.o wavefront.o RBGL_res.o  -Ld:/biocbld/R-2.3.0/bin   -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: graph
Loading required package: Ruuid
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'RBGL'
     Formats: text html latex example chm 
  FileDep                           text    html    latex   example chm
  RBGL.overview                     text    html    latex           chm
  astarSearch                       text    html    latex   example chm
  bandwidth                         text    html    latex   example chm
  bccluster                         text    html    latex   example chm
  bellman.ford.sp                   text    html    latex   example chm
  betweenness                       text    html    latex   example chm
  bfs                               text    html    latex   example chm
  biConnComp                        text    html    latex   example chm
  coloring                          text    html    latex   example chm
  connectedComp                     text    html    latex   example chm
  dag.sp                            text    html    latex   example chm
  dijkstra.sp                       text    html    latex   example chm
  edgeConn                          text    html    latex   example chm
  extractPath                       text    html    latex   example chm
  floyd.warshall.all.pairs.sp       text    html    latex   example chm
  gprofile                          text    html    latex   example chm
  highlyConnSG                      text    html    latex   example chm
  incrConnComp                      text    html    latex   example chm
  is.triangulated                   text    html    latex   example chm
  isomorphism                       text    html    latex   example chm
  johnson.all.pairs.sp              text    html    latex   example chm
  kCliques                          text    html    latex   example chm
  kCores                            text    html    latex   example chm
  layout                            text    html    latex   example chm
  maxClique                         text    html    latex   example chm
  maxFlow                           text    html    latex   example chm
  minCut                            text    html    latex   example chm
  mstree.kruskal                    text    html    latex   example chm
  ordering                          text    html    latex   example chm
  prim.minST                        text    html    latex   example chm
  separates                         text    html    latex   example chm
  sp.between                        text    html    latex   example chm
  strongComp                        text    html    latex   example chm
  transClosure                      text    html    latex   example chm
  tsort                             text    html    latex   example chm
  wavefront                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\work-area\1.8d\madman\Rpacks\RBGL\chm\RBGL.chm





Compile time: 0 minutes, 0 seconds

38	Topics

144	Local links

0	Internet links

1	Graphic





Created d:\biocbld\work-area\1.8d\madman\Rpacks\RBGL\chm\RBGL.chm, 55,063 bytes

Compression decreased file by 70,550 bytes.

  adding MD5 sums

* DONE (RBGL)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'RBGL_1.8.1.tar.gz'