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| Package: GLAD |
| Version: 1.6.0 |
| Command: D:\biocbld\R-2.3.0\bin\R.exe CMD build GLAD |
| RetCode: 0 |
| Time: 45.5 seconds |
| Status: OK |
| PackageFile: GLAD_1.6.0.tar.gz |
* checking for file 'GLAD/DESCRIPTION' ... OK
* preparing 'GLAD':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/work-area/1.8d/tmpdir/Rinst440002352
---------- Making package GLAD ------------
adding build stamp to DESCRIPTION
making DLL ...
making distance.d from distance.c
making glad-function.d from glad-function.c
making hclust.d from hclust.c
making laws.d from laws.c
making glad.d from glad.cpp
gcc -Id:/biocbld/R-2.3.0/include -Wall -O2 -c distance.c -o distance.o
distance.c: In function `R_correlation':
distance.c:175: warning: unused variable `dist'
gcc -Id:/biocbld/R-2.3.0/include -Wall -O2 -c glad-function.c -o glad-function.o
glad-function.c: In function `updateOutliers':
glad-function.c:118: warning: suggest parentheses around comparison in operand of &
glad-function.c: In function `updateOutliersMoveBkp':
glad-function.c:143: warning: suggest parentheses around comparison in operand of &
glad-function.c: In function `moveBkp':
glad-function.c:174: warning: suggest parentheses around comparison in operand of &
glad-function.c:174: warning: suggest parentheses around comparison in operand of &
glad-function.c:174: warning: suggest parentheses around comparison in operand of &
glad-function.c:185: warning: suggest parentheses around comparison in operand of &
glad-function.c:185: warning: suggest parentheses around comparison in operand of &
glad-function.c:185: warning: suggest parentheses around comparison in operand of &
glad-function.c:185: warning: suggest parentheses around comparison in operand of &
glad-function.c: In function `awsBkp':
glad-function.c:231: warning: suggest parentheses around comparison in operand of &
glad-function.c:231: warning: suggest parentheses around comparison in operand of &
glad-function.c:231: warning: suggest parentheses around comparison in operand of &
glad-function.c:259: warning: suggest parentheses around comparison in operand of &
glad-function.c:261: warning: suggest parentheses around comparison in operand of |
glad-function.c: In function `updateBkpRL':
glad-function.c:333: warning: suggest parentheses around comparison in operand of |
glad-function.c:367: warning: suggest parentheses around comparison in operand of &
glad-function.c:367: warning: suggest parentheses around comparison in operand of &
glad-function.c:377: warning: suggest parentheses around comparison in operand of &
glad-function.c: In function `updateGNL':
glad-function.c:543: warning: suggest parentheses around comparison in operand of |
glad-function.c:556: warning: suggest parentheses around comparison in operand of |
gcc -Id:/biocbld/R-2.3.0/include -Wall -O2 -c hclust.c -o hclust.o
hclust.c: In function `hclust':
hclust.c:56: warning: unused variable `tmp'
hclust.c:276: warning: control reaches end of non-void function
hclust.c:49: warning: 'im' might be used uninitialized in this function
hclust.c:49: warning: 'jm' might be used uninitialized in this function
hclust.c:49: warning: 'jj' might be used uninitialized in this function
gcc -Id:/biocbld/R-2.3.0/include -Wall -O2 -c laws.c -o laws.o
g++ -Id:/biocbld/R-2.3.0/include -Wall -O2 -c glad.cpp -o glad.o
glad.cpp: In function `void detectOutliers(double*, int*, int*, int*, int*, int*, double*, int*)':
glad.cpp:106: warning: comparison between signed and unsigned integer expressions
windres --include-dir d:/biocbld/R-2.3.0/include -i GLAD_res.rc -o GLAD_res.o
g++ -shared -s -o GLAD.dll GLAD.def distance.o glad-function.o hclust.o laws.o glad.o GLAD_res.o -Ld:/biocbld/R-2.3.0/bin -lR
... DLL made
installing DLL
installing R files
installing demos
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'GLAD'
Formats: text html latex example chm
ChrNumeric text html latex example chm
ColorBar text html latex example chm
GLAD-internal text html latex chm
arrayCGH text html latex example chm
arrayPersp text html latex example chm
arrayPlot text html latex example chm
as.data.frame.profileCGH text html latex example chm
as.profileCGH text html latex example chm
bladder text html latex example chm
cytoband text html latex example chm
daglad text html latex example chm
glad text html latex example chm
hclust text html latex example chm
kernel text html latex chm
myPalette text html latex example chm
plotProfile text html latex example chm
profileCGH text html latex example chm
snijders text html latex example chm
tkdaglad text html latex example chm
veltman text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\work-area\1.8d\madman\Rpacks\GLAD\chm\GLAD.chm
Compile time: 0 minutes, 0 seconds
21 Topics
90 Local links
14 Internet links
1 Graphic
Created d:\biocbld\work-area\1.8d\madman\Rpacks\GLAD\chm\GLAD.chm, 52,655 bytes
Compression decreased file by 54,585 bytes.
preparing package GLAD for lazy loading
adding MD5 sums
* DONE (GLAD)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'GLAD_1.6.0.tar.gz'