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* checking for file 'Biostrings/DESCRIPTION' ... OK
* preparing 'Biostrings':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/work-area/1.8d/tmpdir/Rinst476890634


---------- Making package Biostrings ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making R_init_Biostrings.d from R_init_Biostrings.c
making alphabetFrequency.d from alphabetFrequency.c
making bbuf.d from bbuf.c
making ibuf.d from ibuf.c
making shiftor.d from shiftor.c
making utils.d from utils.c
gcc   -Id:/biocbld/R-2.3.0/include -Wall -O2   -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc   -Id:/biocbld/R-2.3.0/include -Wall -O2   -c alphabetFrequency.c -o alphabetFrequency.o
gcc   -Id:/biocbld/R-2.3.0/include -Wall -O2   -c bbuf.c -o bbuf.o
bbuf.c: In function `bbuf_read_enc_chars':
bbuf.c:516: warning: 'letter' might be used uninitialized in this function
bbuf.c: In function `bbuf_readii_enc_chars':
bbuf.c:548: warning: 'letter' might be used uninitialized in this function
bbuf.c: In function `bbuf_write_enc_chars':
bbuf.c:587: warning: 'code' might be used uninitialized in this function
bbuf.c: In function `bbuf_writeii_enc_chars':
bbuf.c:626: warning: 'code' might be used uninitialized in this function
gcc   -Id:/biocbld/R-2.3.0/include -Wall -O2   -c ibuf.c -o ibuf.o
gcc   -Id:/biocbld/R-2.3.0/include -Wall -O2   -c shiftor.c -o shiftor.o
shiftor.c: In function `shiftor':
shiftor.c:224: warning: 'index' might be used uninitialized in this function
gcc   -Id:/biocbld/R-2.3.0/include -Wall -O2   -c utils.c -o utils.o
windres --include-dir d:/biocbld/R-2.3.0/include  -i Biostrings_res.rc -o Biostrings_res.o
gcc  -shared -s  -o Biostrings.dll Biostrings.def R_init_Biostrings.o alphabetFrequency.o bbuf.o ibuf.o shiftor.o utils.o Biostrings_res.o  -Ld:/biocbld/R-2.3.0/bin   -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Creating a new generic function for 'as.integer' in 'Biostrings'
Creating a new generic function for 'toString' in 'Biostrings'
Creating a new generic function for 'nchar' in 'Biostrings'
Creating a new generic function for 'as.matrix' in 'Biostrings'
Warning message:
in the method signature for function 'BStringViews' no definition for class: "file" in: matchSignature(signature, fdef, where) 
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'Biostrings'
     Formats: text html latex example chm 
  BString-class                     text    html    latex   example chm
  BStringViews-class                text    html    latex   example chm
  Biostrings-internals              text    html    latex           chm
  alphabetFrequency                 text    html    latex   example chm
  blosum50                          text    html    latex   example chm
  matchPattern                      text    html    latex   example chm
  needwunsQS                        text    html    latex   example chm
  readFASTA                         text    html    latex   example chm
  reverseComplement                 text    html    latex   example chm
  yeastSEQCHR1                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\work-area\1.8d\madman\Rpacks\Biostrings\chm\Biostrings.chm





Compile time: 0 minutes, 0 seconds

11	Topics

160	Local links

1	Internet link

1	Graphic





Created d:\biocbld\work-area\1.8d\madman\Rpacks\Biostrings\chm\Biostrings.chm, 30,553 bytes

Compression decreased file by 41,327 bytes.

  adding MD5 sums

* DONE (Biostrings)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'Biostrings_2.0.0.tar.gz'