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Command output

* checking for file 'metaArray/DESCRIPTION' ... OK
* preparing 'metaArray':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'metaArray' ...
** libs
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2 -std=gnu99 -Wall -c contr.c -o contr.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2 -std=gnu99 -Wall -c dproc2.c -o dproc2.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2 -std=gnu99 -Wall -c dproc.c -o dproc.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2 -std=gnu99 -Wall -c intcor.c -o intcor.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2 -std=gnu99 -Wall -c lowess.c -o lowess.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2 -std=gnu99 -Wall -c mmath.c -o mmath.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2 -std=gnu99 -Wall -c perm.c -o perm.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2 -std=gnu99 -Wall -c poe.c -o poe.o
poe.c: In function `poe_one_iter':
poe.c:132: warning: `tmp1' might be used uninitialized in this function
gcc -shared -L/usr/local/lib64 -o metaArray.so contr.o dproc2.o dproc.o intcor.o lowess.o mmath.o perm.o poe.o -lm  
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'metaArray'
     Formats: text html latex example 
  Zscore                            text    html    latex   example
  em.draw                           text    html    latex   example
  find.init                         text    html    latex   example
  fit.em                            text    html    latex   example
  intcor                            text    html    latex   example
  logit                             text    html    latex
  mdata                             text    html    latex
  poe.em                            text    html    latex   example
  poe.mcmc                          text    html    latex   example
** building package indices ...
* DONE (metaArray)
* creating vignettes ... OK
* cleaning src
* removing junk files
* excluding invalid files from 'metaArray'
Subdirectory 'man' contains invalid file names:
  pkg.log README
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'metaArray_1.4.0.tar.gz'