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Command output

* checking for file 'Ruuid/DESCRIPTION' ... OK
* preparing 'Ruuid':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
* installing the package to re-build vignettes
* Installing *source* package 'Ruuid' ...
checking for pkg-config... /usr/bin/pkg-config
checking for glib-config... /opt/gnome/bin/glib-config
checking for glib-2.0... yes
checking PKG_CFLAGS... -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include  
checking PKG_LIBS... -L/opt/gnome/lib64 -lglib-2.0  
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking /usr/include/unistd.h usability... yes
checking /usr/include/unistd.h presence... yes
checking for /usr/include/unistd.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -std=gnu99 -Wall -c clear.c -o clear.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -std=gnu99 -Wall -c compare.c -o compare.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -std=gnu99 -Wall -c copy.c -o copy.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -std=gnu99 -Wall -c gen_uuid.c -o gen_uuid.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -std=gnu99 -Wall -c isnull.c -o isnull.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -std=gnu99 -Wall -c pack.c -o pack.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -std=gnu99 -Wall -c parse.c -o parse.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -std=gnu99 -Wall -c Rinit.c -o Rinit.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -std=gnu99 -Wall -c Ruuid.c -o Ruuid.o
Ruuid.c: In function `Ruuid_getuuid':
Ruuid.c:88: warning: unused variable `z'
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -std=gnu99 -Wall -c unpack.c -o unpack.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -std=gnu99 -Wall -c unparse.c -o unparse.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include  -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -std=gnu99 -Wall -c uuid_time.c -o uuid_time.o
gcc -shared -L/usr/local/lib64 -o Ruuid.so clear.o compare.o copy.o gen_uuid.o isnull.o pack.o parse.o Rinit.o Ruuid.o unpack.o unparse.o uuid_time.o -L/opt/gnome/lib64 -lglib-2.0    
** R
** inst
** help
 >>> Building/Updating help pages for package 'Ruuid'
     Formats: text html latex example 
  Ruuid-class                       text    html    latex   example
  getuuid                           text    html    latex   example
  uuidt-class                       text    html    latex   example
** building package indices ...
* DONE (Ruuid)
* creating vignettes ... OK
* cleaning src
* running cleanup
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'Ruuid_1.10.0.tar.gz'