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Command output

* checking for file 'DEDS/DESCRIPTION' ... OK
* preparing 'DEDS':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'DEDS' ...
** libs
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c deds.c -o deds.o
deds.c: In function `type2stat':
deds.c:451: warning: `test' might be used uninitialized in this function
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c distance.c -o distance.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c input.c -o input.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c manip.c -o manip.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c random.c -o random.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c sampling.c -o sampling.o
gcc -I/home/biocbuild/arch/x86_64/R-2.3.0/include -I/home/biocbuild/arch/x86_64/R-2.3.0/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c stat_fun.c -o stat_fun.o
stat_fun.c: In function `tmixture':
stat_fun.c:1083: warning: statement with no effect
stat_fun.c:1061: warning: `res' might be used uninitialized in this function
gcc -shared -L/usr/local/lib64 -o DEDS.so deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o   
** R
** data
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'DEDS'
     Formats: text html latex example 
  ApoA1                             text    html    latex
  DEDS-internal                     text    html    latex
  affySpikeIn                       text    html    latex
  aggregateFun                      text    html    latex   example
  comp.B                            text    html    latex   example
  comp.F                            text    html    latex   example
  comp.FC                           text    html    latex   example
  comp.SAM                          text    html    latex   example
  comp.adjp                         text    html    latex   example
  comp.ebayes                       text    html    latex   example
  comp.fdr                          text    html    latex   example
  comp.modF                         text    html    latex   example
  comp.modt                         text    html    latex   example
  comp.stat                         text    html    latex   example
  comp.t                            text    html    latex   example
  comp.unadjp                       text    html    latex   example
  deds.chooseTest                   text    html    latex   example
  deds.class                        text    html    latex
  deds.genExtra                     text    html    latex   example
  deds.pval                         text    html    latex   example
  deds.stat                         text    html    latex   example
  deds.stat.linkC                   text    html    latex   example
  hist.DEDS                         text    html    latex   example
  pairs.DEDS                        text    html    latex   example
  qqnorm.DEDS                       text    html    latex   example
  topgenes                          text    html    latex   example
** building package indices ...
* DONE (DEDS)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'DEDS_1.4.0.tar.gz'