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* checking for file 'stam/DESCRIPTION' ... OK
* preparing 'stam':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'stam' ...
** libs
gcc -I/home/biocbuild/R-2.3.0/include -I/home/biocbuild/R-2.3.0/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c util.c -o util.o
gcc -shared -L/usr/local/lib64 -o stam.so util.o   
** R
** data
** inst
** save image
Loading required package: GO
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: pamr
Loading required package: cluster
Loading required package: annaffy
Loading required package: KEGG
** help
 >>> Building/Updating help pages for package 'stam'
     Formats: text html latex example 
  golubTrain.cv                     text    html    latex
  golubTrain.fit                    text    html    latex
  image.stamPrediction              text    html    latex
  plot.stamCV                       text    html    latex
  plot.stamFit                      text    html    latex
  plot.stamPrediction               text    html    latex
  stam-internal                     text    html    latex
  stam.cv                           text    html    latex   example
  stam.evaluate                     text    html    latex   example
  stam.fit                          text    html    latex   example
  stam.graph.plot                   text    html    latex
  stam.net                          text    html    latex   example
  stam.predict                      text    html    latex   example
  stam.rgb.colors                   text    html    latex   example
  stam.serve                        text    html    latex   example
  stam.writeHTML                    text    html    latex   example
  stamCV-class                      text    html    latex
  stamEval-class                    text    html    latex
  stamFit-class                     text    html    latex
  stamINode-class                   text    html    latex
  stamLeaf-class                    text    html    latex
  stamNet-class                     text    html    latex
  stamNode-class                    text    html    latex
  stamPrediction-class              text    html    latex
** building package indices ...
* DONE (stam)
* creating vignettes ... OK
* cleaning src
* removing junk files
* excluding invalid files from 'stam'
Subdirectory 'R' contains invalid file names:
  TAGS
Subdirectory 'man' contains invalid file names:
  TAGS
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'stam_1.4.0.tar.gz'