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Command output

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.8d/madman/Rpacks/pairseqsim.Rcheck'
* using Version 2.3.0 (2006-04-24)
* checking for file 'pairseqsim/DESCRIPTION' ... OK
* this is package 'pairseqsim' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pairseqsim' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating pairseqsim-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating pairseqsim-manual.tex ... OK
* checking pairseqsim-manual.tex ... OK