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Command output

* checking for file 'RBGL/DESCRIPTION' ... OK
* preparing 'RBGL':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
removing exploded boost header source...
* installing the package to re-build vignettes
* Installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
g++ -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include  -I/usr/local/include  -IboostIncl  -fPIC  -g -O2 -c bbc.cpp -o bbc.o
g++ -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include  -I/usr/local/include  -IboostIncl  -fPIC  -g -O2 -c cliques.cpp -o cliques.o
g++ -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include  -I/usr/local/include  -IboostIncl  -fPIC  -g -O2 -c hcs.cpp -o hcs.o
g++ -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include  -I/usr/local/include  -IboostIncl  -fPIC  -g -O2 -c incrConnComp.cpp -o incrConnComp.o
g++ -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include  -I/usr/local/include  -IboostIncl  -fPIC  -g -O2 -c interfaces.cpp -o interfaces.o
g++ -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include  -I/usr/local/include  -IboostIncl  -fPIC  -g -O2 -c layout.cpp -o layout.o
g++ -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include  -I/usr/local/include  -IboostIncl  -fPIC  -g -O2 -c minST.cpp -o minST.o
g++ -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include  -I/usr/local/include  -IboostIncl  -fPIC  -g -O2 -c mincut.cpp -o mincut.o
g++ -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include  -I/usr/local/include  -IboostIncl  -fPIC  -g -O2 -c ordering.cpp -o ordering.o
g++ -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include  -I/usr/local/include  -IboostIncl  -fPIC  -g -O2 -c shortestPath.cpp -o shortestPath.o
g++ -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include  -I/usr/local/include  -IboostIncl  -fPIC  -g -O2 -c sna.cpp -o sna.o
g++ -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include  -I/usr/local/include  -IboostIncl  -fPIC  -g -O2 -c wavefront.cpp -o wavefront.o
g++ -G -L/usr/local/lib -o RBGL.so bbc.o cliques.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o shortestPath.o sna.o wavefront.o   
** R
** data
** inst
** save image
Loading required package: graph
Loading required package: Ruuid
** help
 >>> Building/Updating help pages for package 'RBGL'
     Formats: text html latex example 
  FileDep                           text    html    latex   example
  RBGL.overview                     text    html    latex
  astarSearch                       text    html    latex   example
  bandwidth                         text    html    latex   example
  bccluster                         text    html    latex   example
  bellman.ford.sp                   text    html    latex   example
  betweenness                       text    html    latex   example
  bfs                               text    html    latex   example
  biConnComp                        text    html    latex   example
  coloring                          text    html    latex   example
  connectedComp                     text    html    latex   example
  dag.sp                            text    html    latex   example
  dijkstra.sp                       text    html    latex   example
  edgeConn                          text    html    latex   example
  extractPath                       text    html    latex   example
  floyd.warshall.all.pairs.sp       text    html    latex   example
  gprofile                          text    html    latex   example
  highlyConnSG                      text    html    latex   example
  incrConnComp                      text    html    latex   example
  is.triangulated                   text    html    latex   example
  isomorphism                       text    html    latex   example
  johnson.all.pairs.sp              text    html    latex   example
  kCliques                          text    html    latex   example
  kCores                            text    html    latex   example
  layout                            text    html    latex   example
  maxClique                         text    html    latex   example
  maxFlow                           text    html    latex   example
  minCut                            text    html    latex   example
  mstree.kruskal                    text    html    latex   example
  ordering                          text    html    latex   example
  prim.minST                        text    html    latex   example
  separates                         text    html    latex   example
  sp.between                        text    html    latex   example
  strongComp                        text    html    latex   example
  transClosure                      text    html    latex   example
  tsort                             text    html    latex   example
  wavefront                         text    html    latex   example
** building package indices ...
* DONE (RBGL)
* creating vignettes ...Bus Error - core dumped
 OK
* cleaning src
* running cleanup
removing exploded boost header source...
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'RBGL_1.8.1.tar.gz'