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| Package: Biobase |
| Version: 1.10.0 |
| Command: /home/biocbuild/arch/sparc/R-2.3.0/bin/R CMD build Biobase |
| RetCode: 0 |
| Time: 72.7 seconds |
| Status: OK |
| PackageFile: Biobase_1.10.0.tar.gz |
* checking for file 'Biobase/DESCRIPTION' ... OK
* preparing 'Biobase':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'Biobase' ...
** libs
gcc -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c Rinit.c -o Rinit.o
gcc -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c envir.c -o envir.o
gcc -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/home/biocbuild/arch/sparc/R-2.3.0/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c matchpt.c -o matchpt.o
gcc -G -L/usr/local/lib -o Biobase.so Rinit.o envir.o matchpt.o
** R
** data
** inst
** save image
Loading required package: tools
Creating a new generic function for 'nrow' in 'Biobase'
Creating a new generic function for 'ncol' in 'Biobase'
** help
>>> Building/Updating help pages for package 'Biobase'
Formats: text html latex example
Aggregate text html latex example
Biobase-package text html latex
abstract text html latex
addVig2Menu text html latex example
annotation text html latex
assayData text html latex
biocReposList text html latex example
cache text html latex example
class.AnnotatedDataFrame text html latex
class.AssayData text html latex
class.ExpressionSet text html latex example
class.MIAME text html latex
class.MultiSet text html latex example
class.SnpSet text html latex
class.aggregator text html latex
class.annotatedDataset text html latex
class.characterORmiame text html latex
class.container text html latex example
class.eSet text html latex example
class.exprList text html latex example
class.exprMatrix text html latex
class.exprSet text html latex example
class.phenoData text html latex example
combine text html latex
contents text html latex example
copyEnv text html latex example
copySubstitute text html latex example
createPackage text html latex example
data.aaMap text html latex example
data.eset text html latex example
data.geneData text html latex example
data.reporter text html latex example
data.sample.ExpressionSet text html latex example
data.sample.eSet text html latex example
data.sample.exprSet.1 text html latex example
data.sample.exprSet text html latex example
defunct text html latex
description text html latex
dims text html latex
dumpPackTxt text html latex example
esApply text html latex example
exprs text html latex
featureNames text html latex
getPkgVigs text html latex example
internals text html latex
isUnique text html latex example
matchpt text html latex example
multiassign text html latex example
note text html latex example
notes text html latex
openPDF text html latex example
openVignette text html latex example
package.version text html latex example
phenoData text html latex
read.MIAME text html latex example
read.exprSet text html latex example
read.phenoData text html latex example
reporterInfo text html latex
reverseSplit text html latex example
rowQ text html latex example
storageMode text html latex
strbreak text html latex example
testBioCConnection text html latex example
updateOldESet text html latex example
** building package indices ...
Warning: 'eset' is deprecated.
Use 'sample.exprSet.1' instead.
See help("Deprecated")
* DONE (Biobase)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'Biobase_1.10.0.tar.gz'