moe430aPATH2PROBE          package:moe430a          R Documentation

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_D_e_s_c_r_i_p_t_i_o_n:

     moe430aPATH2PROBE is an R environment that provides mappings
     between KEGG ids and manufacturer ids.

_D_e_t_a_i_l_s:

     Each KEGG id is mapped to a named vector of manufacturer ids. The
     name represents the KEGG id and the vector contains all
     manufacturer ids that are found in that particular pathway. An
     'NA' is reported for any KEGG id that cannot be mapped to any
     manufacturer ids.

     Pathway name for a given pathway id can be obtained using the KEGG
     data package that can either be built using AnnBuilder or
     downloaded from Bioconductor <URL: http://www.bioconductor.org>.

     Graphic presentations of pathways are searchable at <URL:
     http://www.genome.ad.jp/kegg/pathway.html> using pathway ids as
     keys.

     Mappings were based on data provided by:

     KEGG:<URL:
     http://gopher5/compbio/annotationSourceData/kegg/pathways>. Built:
     Release 36.0, October 1, 2005

     Entrez Gene:<URL:
     http://gopher5/compbio/annotationSourceData/ftp.ncbi.nlm.nih.gov/g
     ene/DATA/>. Built: Source data downloaded from Entrez Gene on Tue
     Oct  4 20:45:06 2005

     Package built Tue Oct  4 21:05:26 2005

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.genome.ad.jp/kegg/>

_E_x_a_m_p_l_e_s:

         # Convert the environment to a list
         xx <- as.list(moe430aPATH2PROBE)
         # Remove pathway ids that do not map to any probe id
         xx <- xx[!is.na(xx)]
         if(length(xx) > 0){
             # The probe ids for the first two elements of XX
             xx[1:2]
             # Get the first one
             xx[[1]]
         } 

