MouseThymusAgeing

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Bioconductor version: Release (3.20)

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

Author: Mike Morgan [aut, cre], Jeanette Baran-Gale [aut]

Maintainer: Mike Morgan <michael.morgan at abdn.ac.uk>

Citation (from within R, enter citation("MouseThymusAgeing")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseThymusAgeing")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseThymusAgeing")

Available datasets	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, SingleCellData
Version	1.14.0
License	GPL-3
Depends	SingleCellExperiment, SummarizedExperiment
Imports	ExperimentHub, methods, BiocGenerics, S4Vectors
System Requirements
URL
Bug Reports	https://github.com/MarioniLab/MouseThymusAgeing/issues

Suggests	knitr, scuttle, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	miloR
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MouseThymusAgeing_1.14.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/MouseThymusAgeing
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MouseThymusAgeing
Package Short Url	https://bioconductor.org/packages/MouseThymusAgeing/
Package Downloads Report	Download Stats