GSE103322

GEO accession data GSE103322 as a SingleCellExperiment

Bioconductor version: Release (3.20)

Single cell RNA-Seq data for 5902 cells from 18 patients with oral cavity head and neck squamous cell carcinoma available as GEO accession [GSE103322] (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE103322). GSE103322 data have been parsed into a SincleCellExperiment object available in ExperimentHub.

Author: Mariano Alvarez [aut, cre]

Maintainer: Mariano Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("GSE103322")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSE103322")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSE103322")

scRNASeq HNSC data using Bioconductor's ExperimentHub	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CancerData, DNASeqData, ExperimentData, ExperimentHub, ExpressionData, GEO, Genome, Homo_sapiens_Data, RNASeqData, SingleCellData
Version	1.12.0
License	Artistic-2.0
Depends	Biobase, GEOquery
Imports
System Requirements
URL

Suggests	ExperimentHub(>= 0.99.6), knitr, BiocStyle, rmarkdown, SummarizedExperiment, SingleCellExperiment
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GSE103322_1.12.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/GSE103322
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GSE103322
Package Short Url	https://bioconductor.org/packages/GSE103322/
Package Downloads Report	Download Stats