Package: REDseq
Type: Package
Title: Analysis of high-throughput sequencing data processed by
        restriction enzyme digestion
Version: 1.58.0
Date: 2021-05-02
Author: Lihua Julie Zhu, Junhui Li and Thomas Fazzio
Maintainer: Lihua Julie Zhu <julie.zhu@umassmed.edu>
Depends: R (>= 3.5.0), BiocGenerics, BSgenome.Celegans.UCSC.ce2,
        multtest, Biostrings, BSgenome, ChIPpeakAnno
Imports: AnnotationDbi, graphics, IRanges (>= 1.13.5), stats, utils
biocViews: Sequencing, SequenceMatching, Preprocessing
Description: The package includes functions to build restriction enzyme cut site (RECS) map, distribute mapped sequences on the map with five different approaches, find enriched/depleted RECSs for a sample, and identify differentially enriched/depleted RECSs between samples.
License: GPL (>=2)
git_url: https://git.bioconductor.org/packages/REDseq
git_branch: RELEASE_3_23
git_last_commit: 09758b3
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-29 00:10:06 UTC; biocbuild
