CHANGES IN VERSION 1.13.9

-------------------------

CHANGES

    o Fix bug in plot_fusion where the upstream ideogram was incorrect.
      Ref https://github.com/stianlagstad/chimeraviz/issues/83

CHANGES IN VERSION 1.13.8

-------------------------

CHANGES

    o Support Aeron. Ref https://github.com/stianlagstad/chimeraviz/pull/81

CHANGES IN VERSION 1.13.7

-------------------------

CHANGES

    o Support SQUID. Ref https://github.com/stianlagstad/chimeraviz/pull/79

CHANGES IN VERSION 1.13.6

-------------------------

CHANGES

    o Change in plot_circle: Allow for mitochondria. Ref https://github.com/stianlagstad/chimeraviz/issues/80 and https://github.com/stianlagstad/chimeraviz/issues/18. Thank you to Philip Lijnzaad.

CHANGES IN VERSION 1.13.5

-------------------------

CHANGES

    o Change in create_fusion_report: Create the report in the current working directory. Ref https://github.com/stianlagstad/chimeraviz/issues/66

CHANGES IN VERSION 1.13.4
-------------------------

CHANGES

    o Support ChimPipe. Ref https://github.com/stianlagstad/chimeraviz/pull/77

CHANGES IN VERSION 1.9.5
-------------------------

CHANGES

    o Allow calling plot_fusion without bam/bedfile. Ref https://github.com/stianlagstad/chimeraviz/issues/61

CHANGES IN VERSION 1.9.1
-------------------------

CHANGES

    o Fixed a bug in plot_circle where link widths were off. Ref https://github.com/stianlagstad/chimeraviz/issues/52


CHANGES IN VERSION 1.7.1
-------------------------

CHANGES

    o Introduced support for oncofuse. Ref https://github.com/stianlagstad/chimeraviz/issues/47 and https://github.com/stianlagstad/chimeraviz/pull/48/files.


CHANGES IN VERSION 1.5.6
-------------------------

CHANGES

    o The interface for working with chimeraviz has changed to comply with https://github.com/jimhester/lintr. chimeraviz is the same as before, but methods have new names.


CHANGES IN VERSION 1.5.1
-------------------------

NEW FEATURES

    o Added support for the mm10 genome.


CHANGES IN VERSION 1.2.3
-------------------------

NEW FEATURES

    o Added the protein domain plot to show which protein domains are retained in the fusion.

BUG FIXES

    o Fixed a bug in plotFusionReads where too many supporting reads would lead to an error.