Changes in version 0.99.0 (25 July, 2023) + Submitted to Bioconductor Changes in version 0.99.4 (07 Aug, 2023) + Build errors/warnings fixed Changes in version 0.99.16 (25 Aug, 2023) + Changes after first round of review done + Now we have two versions (old version=1 removed, unused) + S4 object output of clust_irr Changes in version 0.99.20-0.99.26 (03 Oct, 2023) + Functions added for: graph building, joining, plotting + S4 object accessors added Changes in version 0.99.28-29 (09 Oct, 2023) + Accepted in Bioconductor Chainges in version 1.1.5 (20 Dec, 2023) + New graph generating and plotting functions Changes in version 1.1.10 (08 Jan, 2024) + New global clustering solution Changes in version 1.3.1 (17 Jun, 2024) + Stub functions for integration of data from VDJdb, TCR3d and MCPAS-TCR Changes in version 1.3.20 (14 Jul, 2024) + Future based parallelization in clustering and graphing Changes in version 1.3.25 (10 Oct, 2024) + Major changes since this version including * community detection * Stan model-based differential community occupancy * supporting functions Changes in version 1.3.34 (19 Oct, 2024) + Stable version but not tested