sigsquared
Gene signature generation for functionally validated signaling pathways
Bioconductor version: Release (3.20)
By leveraging statistical properties (log-rank test for survival) of patient cohorts defined by binary thresholds, poor-prognosis patients are identified by the sigsquared package via optimization over a cost function reducing type I and II error.
Author: UnJin Lee
Maintainer: UnJin Lee <unjin at uchicago.edu>
Citation (from within R, enter
citation("sigsquared")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sigsquared")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sigsquared")| SigSquared | R Script | |
| Reference Manual |
Details
| biocViews | Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
| License | GPL version 3 |
| Depends | R (>= 3.2.0), methods |
| Imports | Biobase, survival |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sigsquared_1.38.0.tar.gz |
| Windows Binary (x86_64) | sigsquared_1.38.0.zip (64-bit only) |
| macOS Binary (x86_64) | sigsquared_1.38.0.tgz |
| macOS Binary (arm64) | sigsquared_1.37.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/sigsquared |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sigsquared |
| Bioc Package Browser | https://code.bioconductor.org/browse/sigsquared/ |
| Package Short Url | https://bioconductor.org/packages/sigsquared/ |
| Package Downloads Report | Download Stats |