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mBPCR

Bayesian Piecewise Constant Regression for DNA copy number estimation


Bioconductor version: Release (3.20)

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

Author: P.M.V. Rancoita <rancoita.paola at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>

Maintainer: P.M.V. Rancoita <rancoita.paola at gmail.com>

Citation (from within R, enter citation("mBPCR")):

Installation

To install this package, start R (version "4.4") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mBPCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mBPCR")
mBPCR PDF R Script
Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CopyNumberVariation, Microarray, SNP, Software, aCGH
Version 1.60.0
In Bioconductor since BioC 2.5 (R-2.10) (15 years)
License GPL (>= 2)
Depends oligoClasses, GWASTools
Imports Biobase, graphics, methods, utils, grDevices
System Requirements
URL http://www.idsia.ch/~paola/mBPCR
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mBPCR_1.60.0.tar.gz
Windows Binary (x86_64) mBPCR_1.60.0.zip (64-bit only)
macOS Binary (x86_64) mBPCR_1.60.0.tgz
macOS Binary (arm64) mBPCR_1.59.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mBPCR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mBPCR
Bioc Package Browser https://code.bioconductor.org/browse/mBPCR/
Package Short Url https://bioconductor.org/packages/mBPCR/
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