NOISeq
Exploratory analysis and differential expression for RNA-seq data
Bioconductor version: Release (3.20)
Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.
Author: Sonia Tarazona, Pedro Furio-Tari, Maria Jose Nueda, Alberto Ferrer and Ana Conesa
Maintainer: Sonia Tarazona <sotacam at eio.upv.es>
citation("NOISeq")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NOISeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NOISeq")| NOISeq User's Guide | R Script | |
| QCreport.pdf | ||
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, Visualization |
| Version | 2.50.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (12 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.13.0), methods, Biobase(>= 2.13.11), splines (>= 3.0.1), Matrix (>= 1.2) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | metaSeq |
| Imports Me | broadSeq, CNVPanelizer, ExpHunterSuite |
| Suggests Me | compcodeR, GeoTcgaData |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | NOISeq_2.50.0.tar.gz |
| Windows Binary (x86_64) | NOISeq_2.50.0.zip |
| macOS Binary (x86_64) | NOISeq_2.50.0.tgz |
| macOS Binary (arm64) | NOISeq_2.49.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/NOISeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NOISeq |
| Bioc Package Browser | https://code.bioconductor.org/browse/NOISeq/ |
| Package Short Url | https://bioconductor.org/packages/NOISeq/ |
| Package Downloads Report | Download Stats |