AnnotationFilter
Facilities for Filtering Bioconductor Annotation Resources
Bioconductor version: Release (3.20)
This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.
Author: Martin Morgan [aut], Johannes Rainer [aut], Joachim Bargsten [ctb], Daniel Van Twisk [ctb], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("AnnotationFilter")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AnnotationFilter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AnnotationFilter")| Facilities for Filtering Bioconductor Annotation resources | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, Infrastructure, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4.0) |
| Imports | utils, methods, GenomicRanges, lazyeval |
| System Requirements | |
| URL | https://github.com/Bioconductor/AnnotationFilter |
| Bug Reports | https://github.com/Bioconductor/AnnotationFilter/issues |
See More
| Suggests | BiocStyle, knitr, testthat, RSQLite, org.Hs.eg.db, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | chimeraviz, CompoundDb, ensembldb, Organism.dplyr |
| Imports Me | biovizBase, BUSpaRse, CleanUpRNAseq, drugTargetInteractions, ggbio, QFeatures, RAIDS, RITAN, scanMiRApp, TVTB, GenomicDistributionsData, locuszoomr, RNAseqQC |
| Suggests Me | GenomicDistributions, GenomicFeatures, TFutils, wiggleplotr |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AnnotationFilter_1.30.0.tar.gz |
| Windows Binary (x86_64) | AnnotationFilter_1.30.0.zip |
| macOS Binary (x86_64) | AnnotationFilter_1.30.0.tgz |
| macOS Binary (arm64) | AnnotationFilter_1.29.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AnnotationFilter |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AnnotationFilter |
| Bioc Package Browser | https://code.bioconductor.org/browse/AnnotationFilter/ |
| Package Short Url | https://bioconductor.org/packages/AnnotationFilter/ |
| Package Downloads Report | Download Stats |