annotateFromBiomart     Annotate your Expression Set with biomaRt
bladder                 Bladder RNA-seq data from the GTEx consortium
checkMisAnnotation      Check for wrong annotation of a sample using
                        classical MDS and control genes.
checkTissuesToMerge     Check tissues to merge based on gene expression
                        profile
downloadGTEx            Download GTEx files and turn them into
                        ExpressionSet object
extractMatrix           Extract the appropriate matrix
filterGenes             Filter specific genes
filterLowGenes          Filter genes that have less than a minimum
                        threshold CPM for a given group/tissue
filterMissingGenes      Filter genes not expressed in any sample
filterSamples           Filter samples
normalizeTissueAware    Normalize in a tissue aware context
plotCMDS                Plot classical MDS of dataset
plotDensity             Density plots of columns in a matrix
plotHeatmap             Plot heatmap of most variable genes
qsmooth                 Quantile shrinkage normalization
qstats                  Compute quantile statistics
skin                    Skin RNA-seq data from the GTEx consortium
