# Generated by roxygen2: do not edit by hand

export(.initComplete)
export(BuildColorStyles)
export(Build_X_CC)
export(Build_enriched_qdata)
export(CVDist)
export(Check_MSnSet_Consistency)
export(Check_se_Consistency)
export(Children)
export(ExtendPalette)
export(FormatDataForDT)
export(GetCCInfos)
export(GetColorsForConditions)
export(GetMetacellTags)
export(GetPkgVersion)
export(MAE_Compatibility_with_Prostar_1x)
export(MAE_to_mae)
export(MSnSet_to_mae)
export(MSnSet_to_se)
export(Parent)
export(QFeatures_to_mae)
export(SE_Compatibility_with_Prostar_1.x)
export(SE_to_mae)
export(SampleColors)
export(addModules)
export(boxPlot)
export(buildGraph)
export(colorLegend)
export(colorLegend_server)
export(colorLegend_ui)
export(convert_to_mae)
export(corrMatrix)
export(customChart)
export(customExportMenu)
export(custom_metacell_colors)
export(densityPlot)
export(df_to_mae)
export(df_to_se)
export(display.CC.visNet)
export(extFoo1)
export(extFoo1_server)
export(extFoo1_ui)
export(extFoo2)
export(extFoo2_server)
export(extFoo2_ui)
export(formatDT)
export(formatDT_server)
export(formatDT_ui)
export(globals)
export(heatmapD)
export(heatmapForMissingValues)
export(is.listOf)
export(listOfLists_to_mae)
export(listOfMSnSet_to_mae)
export(listOfSE_to_mae)
export(listOfdf_to_mae)
export(listOfmatrix_to_mae)
export(listPlotModules)
export(listShinyApps)
export(list_to_se)
export(matrix_to_mae)
export(matrix_to_se)
export(metacell.def)
export(mv.heatmap)
export(my_PCA)
export(omXplore_cc)
export(omXplore_cc_server)
export(omXplore_cc_ui)
export(omXplore_corrmatrix)
export(omXplore_corrmatrix_server)
export(omXplore_corrmatrix_ui)
export(omXplore_density)
export(omXplore_density_server)
export(omXplore_density_ui)
export(omXplore_heatmap)
export(omXplore_heatmap_server)
export(omXplore_heatmap_ui)
export(omXplore_intensity)
export(omXplore_intensity_server)
export(omXplore_intensity_ui)
export(omXplore_pca)
export(omXplore_pca_server)
export(omXplore_pca_ui)
export(omXplore_tabExplorer)
export(omXplore_tabExplorer_server)
export(omXplore_tabExplorer_ui)
export(omXplore_variance)
export(omXplore_variance_server)
export(omXplore_variance_ui)
export(pkgs.require)
export(plotCCJitter)
export(plotPCA_Eigen)
export(plotPCA_Eigen_hc)
export(plotPCA_Ind)
export(plotPCA_Var)
export(plots_tracking)
export(plots_tracking_server)
export(plots_tracking_ui)
export(view_dataset)
export(view_dataset_server)
export(view_dataset_ui)
export(violinPlot)
export(wrapper_pca)
exportMethods(get_adjacencyMatrix)
exportMethods(get_cc)
exportMethods(get_colID)
exportMethods(get_design)
exportMethods(get_group)
exportMethods(get_metacell)
exportMethods(get_parentProtId)
exportMethods(get_pkg_version)
exportMethods(get_type)
import(FactoMineR)
import(RColorBrewer)
import(bs4Dash)
import(dendextend)
import(factoextra)
import(gplots)
import(grDevices)
import(graphics)
import(highcharter)
import(nipals)
import(shiny)
import(shinyBS)
import(thematic)
import(tidyr)
import(vioplot)
import(visNetwork)
import(waiter)
importFrom(DT,DTOutput)
importFrom(DT,JS)
importFrom(DT,dataTableOutput)
importFrom(DT,dataTableProxy)
importFrom(DT,datatable)
importFrom(DT,formatStyle)
importFrom(DT,renderDT)
importFrom(DT,renderDataTable)
importFrom(DT,replaceData)
importFrom(DT,styleEqual)
importFrom(MSnbase,exprs)
importFrom(MSnbase,fData)
importFrom(MSnbase,pData)
importFrom(MultiAssayExperiment,DataFrame)
importFrom(MultiAssayExperiment,ExperimentList)
importFrom(MultiAssayExperiment,MultiAssayExperiment)
importFrom(PSMatch,ConnectedComponents)
importFrom(PSMatch,makeAdjacencyMatrix)
importFrom(RColorBrewer,brewer.pal)
importFrom(RColorBrewer,brewer.pal.info)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,heat.colors)
importFrom(grDevices,png)
importFrom(graphics,axis)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,plot.window)
importFrom(graphics,points)
importFrom(graphics,segments)
importFrom(graphics,strheight)
importFrom(graphics,strwidth)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(highcharter,hc_add_series)
importFrom(highcharter,hc_colorAxis)
importFrom(highcharter,hc_legend)
importFrom(highcharter,hc_plotOptions)
importFrom(highcharter,hc_tooltip)
importFrom(highcharter,hc_xAxis)
importFrom(highcharter,hc_yAxis)
importFrom(highcharter,highchart)
importFrom(highcharter,highchartOutput)
importFrom(highcharter,list_parse)
importFrom(highcharter,list_parse2)
importFrom(highcharter,renderHighchart)
importFrom(htmlwidgets,JS)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(shiny,NS)
importFrom(shiny,actionButton)
importFrom(shiny,addResourcePath)
importFrom(shiny,br)
importFrom(shiny,checkboxInput)
importFrom(shiny,column)
importFrom(shiny,div)
importFrom(shiny,fluidPage)
importFrom(shiny,fluidRow)
importFrom(shiny,h3)
importFrom(shiny,h4)
importFrom(shiny,helpText)
importFrom(shiny,imageOutput)
importFrom(shiny,isolate)
importFrom(shiny,moduleServer)
importFrom(shiny,numericInput)
importFrom(shiny,observe)
importFrom(shiny,observeEvent)
importFrom(shiny,p)
importFrom(shiny,plotOutput)
importFrom(shiny,radioButtons)
importFrom(shiny,reactive)
importFrom(shiny,reactiveValues)
importFrom(shiny,renderImage)
importFrom(shiny,renderPlot)
importFrom(shiny,renderUI)
importFrom(shiny,req)
importFrom(shiny,selectInput)
importFrom(shiny,selectizeInput)
importFrom(shiny,shinyApp)
importFrom(shiny,sliderInput)
importFrom(shiny,tabPanel)
importFrom(shiny,tabsetPanel)
importFrom(shiny,tagList)
importFrom(shiny,textInput)
importFrom(shiny,uiOutput)
importFrom(shiny,updateSelectInput)
importFrom(shiny,updateSelectizeInput)
importFrom(shiny,wellPanel)
importFrom(shiny,withProgress)
importFrom(shinyBS,bsCollapse)
importFrom(shinyBS,bsCollapsePanel)
importFrom(shinyBS,bsModal)
importFrom(shinyjqui,jqui_resizable)
importFrom(shinyjs,hidden)
importFrom(shinyjs,hide)
importFrom(shinyjs,show)
importFrom(shinyjs,toggle)
importFrom(shinyjs,useShinyjs)
importFrom(stats,as.dendrogram)
importFrom(stats,cor)
importFrom(stats,density)
importFrom(stats,hclust)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)
importFrom(tidyr,gather)
importFrom(utils,combn)
importFrom(utils,installed.packages)
importFrom(visNetwork,renderVisNetwork)
importFrom(visNetwork,visEvents)
importFrom(visNetwork,visNetworkOutput)
