# Generated by roxygen2: do not edit by hand

export(BamFileReference)
export(BamIndexWrapper)
export(BamWrapper)
export(BcfFileReference)
export(BedFileReference)
export(BedWrapper)
export(BgzipIndexWrapper)
export(BigBedFileReference)
export(BigBedWrapper)
export(BigWigFileReference)
export(BigWigWrapper)
export(FaIndexWrapper)
export(FastaFileReference)
export(FastaWrapper)
export(FastqFileReference)
export(FastqWrapper)
export(GffFileReference)
export(GffWrapper)
export(GmtFileReference)
export(GmtWrapper)
export(TabixIndexWrapper)
export(VcfWrapper)
export(compression)
export(loadBamIndexWrapper)
export(loadBamWrapper)
export(loadBedWrapper)
export(loadBgzipIndexWrapper)
export(loadBigBedWrapper)
export(loadBigWigWrapper)
export(loadFaIndexWrapper)
export(loadFastaWrapper)
export(loadFastqWrapper)
export(loadGffWrapper)
export(loadGmtWrapper)
export(loadTabixIndexWrapper)
export(loadVcfWrapper)
export(readBamFileReference)
export(readBcfFileReference)
export(readBedFileReference)
export(readBigBedFileReference)
export(readBigWigFileReference)
export(readFastaFileReference)
export(readFastqFileReference)
export(readGffFileReference)
export(readGmtFileReference)
exportClasses(BamFileReference)
exportClasses(BamIndexWrapper)
exportClasses(BamWrapper)
exportClasses(BcfFileReference)
exportClasses(BedFileReference)
exportClasses(BedWrapper)
exportClasses(BgzipIndexWrapper)
exportClasses(BigBedFileReference)
exportClasses(BigBedWrapper)
exportClasses(BigWigFileReference)
exportClasses(BigWigWrapper)
exportClasses(CompressedIndexedWrapper)
exportClasses(CompressedWrapper)
exportClasses(FaIndexWrapper)
exportClasses(FastaFileReference)
exportClasses(FastaWrapper)
exportClasses(FastqFileReference)
exportClasses(FastqWrapper)
exportClasses(FileReference)
exportClasses(GffFileReference)
exportClasses(GffWrapper)
exportClasses(GmtFileReference)
exportClasses(GmtWrapper)
exportClasses(IndexedWrapper)
exportClasses(TabixIndexWrapper)
exportClasses(VcfWrapper)
exportClasses(Wrapper)
exportMethods("$")
exportMethods("$<-")
exportMethods("[[")
exportMethods("[[<-")
exportMethods(index)
exportMethods(path)
exportMethods(saveObject)
exportMethods(show)
exportMethods(stageObject)
import(alabaster.base)
import(methods)
importClassesFrom(S4Vectors,Annotated)
importFrom(BiocGenerics,path)
importFrom(Rsamtools,index)
importFrom(S4Vectors,coolcat)
importFrom(S4Vectors,metadata)
importFrom(alabaster.base,.loadObject)
importFrom(alabaster.base,.processMetadata)
importFrom(alabaster.base,.restoreMetadata)
importFrom(alabaster.base,.stageObject)
importFrom(alabaster.base,.writeMetadata)
importFrom(alabaster.base,acquireFile)
importFrom(alabaster.base,acquireMetadata)
importFrom(alabaster.base,stageObject)
