calculateShift	calculateShift
distanceTx	distanceTx
extractRegions	extractRegions
getFormatCorrect	getFormatCorrect
getPermSpaceByFeatures	getPermSpaceByFeatures
getPermSpaceByTxID	getPermSpaceByTxID
getPermSpaceByType	getPermSpaceByType
getPvalZscore	getPvalZscore
getStopCodon	getStopCodon
getTransInfo	getTransInfo
GRanges2GRangesList	GRanges2GRangesList
GRangesList2GRanges	GRangesList2GRanges
overlapCountsTx	overlapCountsTx
overlapCountsTxIA	overlapCountsTxIA
overlapWidthTx	overlapWidthTx
permTestTx	permTestTx
permTestTxIA	permTestTxIA
permTestTxIA_customPick	permTestTxIA_customPick
permTestTx_customAll	permTestTx_customAll
permTestTx_customPick	permTestTx_customPick
plotPermResults	plotPermResults
plotShiftedZScoreTx	plotShiftedZScoreTx
randomizeFeaturesTx	randomizeFeaturesTx
randomizeFeaturesTxIA	randomizeFeaturesTxIA
randomizeTransByOrder	randomizeTransByOrder
randomizeTx	randomizeTx
shiftedZScoreTx	shiftedZScoreTx
shiftTx	shiftTx
vector2GRangesList	vector2GRangesList
