3a94e27b48ef91a096aca728e41e584d *CITATION
f84fb312a5808e6380fa180c9a870999 *DESCRIPTION
8923d4eadc54faff60ed51a96f140794 *INDEX
28dad4492fcf2f517fc721fd2834f28b *LICENSE
7494d4b4d66d3233e7a62e223afad5eb *Meta/Rd.rds
97f39cfa069205fc947ab1e51ea53d4e *Meta/features.rds
b1b865cf0af3e01e4350fb58edda7ead *Meta/hsearch.rds
1fe3e33387552955cff35c1650e7405e *Meta/links.rds
078f0a98e6fc84a8b9e1a2b29541bb33 *Meta/nsInfo.rds
25076d4066a3bce259a5e252d2225c02 *Meta/package.rds
acb87c8729f63d7cda6539705773f695 *Meta/vignette.rds
9d1596c4ecb74f6e82bad5919d578475 *NAMESPACE
ed95998103c1f15eb33bec8675b89832 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/MutationalPatterns
b8718f93dc51ed7e04a5d73d9cd45666 *R/MutationalPatterns.rdb
e1a1d1af69c92c153108d04a4600523e *R/MutationalPatterns.rdx
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7c8f99f154f53b8a8318684ebc679756 *extdata/ReplicationDirectionRegions.bed
643092cb274fce36504f839500210821 *extdata/blood-AC.vcf
fc7938084ce8fbe9847d01bf118aa490 *extdata/blood-ACC55.vcf
150473517ba18e3aaf399c9b180c960b *extdata/blood-BCH.vcf
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a2bfb21690d86ad4e607cd119854f3bc *extdata/colon2-sample.vcf
95a608fddd72b1765036f927ad30e387 *extdata/colon3-sample.vcf
1a050f99f58a0afc3a17158fde0e5b42 *extdata/duplicate.vcf
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3d94d229781d592ff4596da5634adf9a *extdata/intestine3-sample.vcf
39f063623d16503183ee9dffee66e616 *extdata/liver1-sample.vcf
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2a1f82ea11ac948eb739611bd45f8705 *extdata/liver3-sample.vcf
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f962bbf63297d6a6da44c464224d4f85 *extdata/signatures/dbs_COSMIC_v3.2_reference_GRCh37.txt
8c59a0a3adc0a8780aa87911b59c3f59 *extdata/signatures/dbs_COSMIC_v3.2_reference_GRCh38.txt
3c7bdead32cf4a245c0a2aa974f054d0 *extdata/signatures/dbs_COSMIC_v3.2_reference_mm10.txt
5e052965ee25f874cd1c9082ed37e694 *extdata/signatures/dbs_SIGNAL_exposure.txt
71fcffe1378db7d61ae8e23d1d670cbb *extdata/signatures/indel_COSMIC_v3.1_reference.txt
eec0300b238112055b8296d900790766 *extdata/signatures/indel_COSMIC_v3.2_reference_GRCh37.txt
9e868e8eb41b0d2545ed168d034ba9c9 *extdata/signatures/snv_COSMIC_v3.1_reference.txt
7aa849f8c84eb4c954caa1fa952c4f2c *extdata/signatures/snv_COSMIC_v3.2_reference_GRCh37.txt
3ad8e301d492818d50fe78cc7efd066d *extdata/signatures/snv_COSMIC_v3.2_reference_GRCh38.txt
3d1163b13da4633a8e89068f4ca5d28f *extdata/signatures/snv_COSMIC_v3.2_reference_mm10.txt
5ad31ce61e64b1ab1098f7d05130fc52 *extdata/signatures/snv_SIGNAL_exposure.txt
9ee9b09a6d6feb0fc153f30863ab9466 *extdata/signatures/snv_SIGNAL_reference.txt
fe868420f878f439498981e8e039ce10 *extdata/signatures/snv_SIGNAL_tissue.txt
fe9e67dbb125a7400885ec628cf9328a *extdata/signatures/snv_SPARSE_reference.txt
8048639b0d0fbc89dbee8b06dccbd560 *extdata/signatures/tsb_snv_COSMIC_v3.1_reference.txt
91477419453b74175246f0b75f3e5f08 *help/AnIndex
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5603c82a5f1b4589a003d6f5b8b8a40a *help/MutationalPatterns.rdx
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403c69dfa78265ce3243a98014517e43 *scripts/Format_signatures.R
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d6b322652e615904701ef72e4c44459c *states/blood_dbs_counts.rds
d2aba5cdae0153f8f2bd6ebd50b08326 *states/blood_grl.rds
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55d9b55591e9d90ec22cb27fa2ef35f3 *states/promoter_flanking_g_data.rds
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ada3717b99be495b104045ec6f9ab641 *states/read_vcfs_as_granges_output.rds
a87640b8af9ff1f8de3ec6aca1d29455 *states/regional_sims.rds
363ba368ff0bafd6054066a1a992f1f3 *states/regulatory_data.rds
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1cb70f76a2a43bd4c0f9b6414ee11690 *states/strict_snv_refit.rds
