annotateBiotransf	annotateBiotransf
Biotransformations	Biotransformations
biotransformationsTable	biotransformationsTable
classes	classes
classifRatioClasses	classifRatioClasses
classNum	classNum
Database	Database
featureID	featureID
featureInfo	featureInfo
featureSigID	featureSigID
FisherLSD	FisherLSD
getScoresTable	getScoresTable
identifyMetabolites	identifyMetabolites
inBetween	inBetween
loadings	loadings
loadings,MAIT-method	MAIT-class
LSDResults	LSDResults
MAIT	MAIT_dataSet
MAIT-class	MAIT-class
MAIT.FeatureData-class	MAIT.FeatureData-class
MAIT.FeatureInfo-class	MAIT.FeatureInfo-class
MAIT.Parameters-class	MAIT.Parameters-class
MAIT.PhenoData-class	MAIT.PhenoData-class
MAIT.RawData-class	MAIT.RawData-class
MAIT.Validation-class	MAIT.Validation-class
MAITbuilder	MAITbuilder
metaboliteTable	metaboliteTable
method	method
model	model
model,MAIT-method	MAIT-class
models	models
negAdducts	negAdducts
ovClassifRatioData	ovClassifRatio
ovClassifRatioTable	ovClassifRatioTable
parameters	parameters
pcaLoadings	pcaLoadings
pcaModel	pcaModel
PCAplot3d	PCAplot3d
pcaScores	pcaScores
peakAggregation	peakAggregation
peakAnnotation	peakAnnotation
plotBoxplot	plotBoxplot
plotHeatmap	plotHeatmap
plotPCA	plotPCA
plotPLS	plotPLS
PLSDA	PLSDA
plsLoadings	plsLoadings
plsModel	plsModel
plsScores	plsScores
posAdducts	posAdducts
project	project
pvalues	pvalues
pvaluesCorrection	pvaluesCorrection
rawData	rawData
removeOnePeakSpectra	removeOnePeakSpectra
resultsPath	resultsPath
retrieveSpectrum	retrieveSpectrum
sampleProcessing	sampleProcessing
scores	scores
scores,MAIT-method	MAIT-class
SearchCand	SearchCand
selectK	selectK
selectPLScomp	selectPLScomp
sigPeaksTable	sigPeaksTable
spectralAnova	spectralAnova
spectralFUN	spectralFUN
spectralKruskal	spectralKruskal
spectralSigFeatures	spectralSigFeatures
spectralTStudent	spectralTStudent
spectralWelch	spectralWelch
spectralWilcox	spectralWilcox
successRatio	successRatio
summary,MAIT-method	MAIT-class
Validation	Validation
writeExcelTable	writeExcelTable
writeParameterTable	writeParameterTable
