DMRcaller-package	DMRcaller
analyseReadsInsideRegionsForCondition	analyseReadsInsideRegionsForCondition
computeDMRs	computeDMRs
computeDMRsReplicates	computeDMRsReplicates
computeMethylationDataCoverage	computeMethylationDataCoverage
computeMethylationDataSpatialCorrelation	computeMethylationDataSpatialCorrelation
computeMethylationProfile	computeMethylationProfile
computeOverlapProfile	computeOverlapProfile
DMRcaller	DMRcaller
DMRsNoiseFilterCG	DMRsNoiseFilterCG
extractGC	extractGC
filterDMRs	filterDMRs
GEs	GEs
getWholeChromosomes	getWholeChromosomes
joinReplicates	joinReplicates
mergeDMRsIteratively	mergeDMRsIteratively
methylationDataList	methylationDataList
plotLocalMethylationProfile	plotLocalMethylationProfile
plotMethylationDataCoverage	plotMethylationDataCoverage
plotMethylationDataSpatialCorrelation	plotMethylationDataSpatialCorrelation
plotMethylationProfile	plotMethylationProfile
plotMethylationProfileFromData	plotMethylationProfileFromData
plotOverlapProfile	plotOverlapProfile
poolMethylationDatasets	poolMethylationDatasets
poolTwoMethylationDatasets	poolTwoMethylationDatasets
readBismark	readBismark
readBismarkPool	readBismarkPool
saveBismark	saveBismark
syntheticDataReplicates	syntheticDataReplicates
