## ----include=FALSE------------------------------------------------------------
library(knitr)
opts_chunk$set(
concordance = TRUE,
background = "#f3f3ff"
)

## ----eval=FALSE---------------------------------------------------------------
#  # install SIMLR dependencies
#  if (!require("Matrix")) install.packages("Matrix")
#  if (!require("Rcpp")) install.packages("Rcpp")
#  if (!require("RcppAnnoy")) install.packages("RcppAnnoy")
#  if (!require("RSpectra")) install.packages("RSpectra")
#  if (!require("pracma")) install.packages("pracma")
#  
#  # install SIMLR library
#  if (!require("devtools")) install.packages("devtools")
#  library("devtools")
#  install_github("BatzoglouLabSU/SIMLR", ref = "master")
#  
#  # load SIMLR library
#  library("SIMLR")