af14dd091a2961752b7236db532bd98f *DESCRIPTION
6e81e0ba6fc9dca6665c8fb374e5fc20 *NAMESPACE
be5a459f4ab04bb8ee94cd0bd79a8569 *NEWS.md
d02c669824e65058436c42ef8cb0f4f2 *R/RcppExports.R
92c5beb64cc21b3731b5148c31b28e97 *R/fraq_code_template.R
356e24c0ea4269592f7b233bba934e55 *R/fraq_mem.R
a8afc1b7c0847d0e478589190a6033bb *R/fraq_shortread.R
f3acccd5f774548ba3285d3712c12de2 *R/function_documentation.R
2308a7a25c60fbd06f2713e977fac1da *R/generate_random_fastq.R
3a3e68542ec9406c2c173592729f4ede *R/zzz.R
3a8f147a57a1d9bd7edb99c67826d47b *README.md
bd48d86bd1a770bc688c1a5b8c149584 *build/vignette.rds
085969dd39e951fb81a28d4c13dd8851 *cleanup
ff8c55e02f9723532c93d8bf2ae353f7 *configure
6b90b02cee093a5056acbad7b69163e5 *configure.ac
8d44a0c8f04af8fb2c4dee210844465a *inst/doc/fraq_getting_started.R
279c737c4f6618b0e84a6984ddef77f2 *inst/doc/fraq_getting_started.Rmd
dc08321020edb0c5dd5ba62d963bc3b2 *inst/doc/fraq_getting_started.html
6413a61198fb05694c69b878a97bca83 *inst/include/fraq.h
c39ab985b209cd74934480f5eff447c6 *inst/include/fraq_defines.h
c7f0b161edbe52f5f345a3d1311d0b32 *inst/licenses/ZSTD_BSD_LICENSE.txt
b234ee4d69f5fce4486a80fdaf4a4263 *inst/licenses/ZSTD_GPL2_LICENSE.txt
af57921e3f512f5b1dbf093ce15bde45 *man/fraq-package.Rd
3005100ac7cee9870cadf7f5162e4fa2 *man/fraq_align.Rd
2d8707adef2defb0d74acc0b592674c2 *man/fraq_chunk.Rd
6dfeff386abad3fd5dcb7ce54582b584 *man/fraq_concat.Rd
8054d016845c11a05fe11df471fcb4e7 *man/fraq_convert.Rd
3716e8d763ae4d5354ab1a912cc206e5 *man/fraq_count_barcodes.Rd
00340e7c8a3a0c3bad8b61aab5b90d71 *man/fraq_demux.Rd
5a2ca56fff01e2c61e1a66bcbb25a1df *man/fraq_downsample.Rd
10ba0a3d857f95e78ac32fdba88e0b48 *man/fraq_fifo_supported.Rd
4178abd4396907b671bf9a7125651edb *man/fraq_mem_list.Rd
afc8536ad60e5f02817d3dd440547026 *man/fraq_merge_pairs.Rd
11f4705a063a61e75c41c95be0b03f6a *man/fraq_options.Rd
9173b5118273c5d1979d12c66a198d11 *man/fraq_quality_filter.Rd
8ddd70c168b179d64396ac5907c2a566 *man/fraq_rcpp_template.Rd
41cb021df47828baf6abcdd9a9f66587 *man/fraq_shortread.Rd
368febddcfd675edbdf316a31028ffcc *man/fraq_slice.Rd
eb64f79bd67ebdff0a03a18eacf4f36b *man/fraq_summary.Rd
9468b2ca1da3a1fdfcdc2a7ff015087e *man/fraq_trim_adapters.Rd
e2da45e5155141cbff25ae6db033d6e3 *man/generate_random_fastq.Rd
c7f0b161edbe52f5f345a3d1311d0b32 *src/LICENSES/ZSTD_BSD_LICENSE.txt
b234ee4d69f5fce4486a80fdaf4a4263 *src/LICENSES/ZSTD_GPL2_LICENSE.txt
2c2f7bf876ad57e75173c15545604fbd *src/Makevars.in
8ce8218a9cf4277ee791953c4456e4a2 *src/Makevars.win
e45fc3d37fcad8a409c129e0b314e5e6 *src/RcppExports.cpp
97a01b55869cf099d4e99d3ab5bf9123 *src/ZSTD/zstd.c
a6877b0889398f9d6e1ec28a6e0a1a28 *src/ZSTD/zstd.h
15f5dfbf97188aee55ba037db2a27acb *src/distance_functions.h
7089b7f49eb2ab7746266d595b30df73 *src/fraq_concat.h
f426af92ceae106b85ae12ef920358c8 *src/fraq_functions.cpp
d5107f852886db748f615684881c86c2 *src/fraq_run_graph.h
8529d89c531665af029dac7ad98eaefc *src/io/fraq_format.h
5d54509a993f2cefc6bc08bd5395d7ff *src/io/fraq_readers.h
ba5375afd4d39012ad341438246371ca *src/io/fraq_writers.h
e1ab0badfeebe476dcf33c0082ea8c7c *tests/fraq_concat_tests.R
551ec819beed85321a5cf6aa504cf0df *tests/fraq_fifo_tests.R
c093315e22da7e7d23682d85d60b6766 *tests/fraq_format_tests.R
9f0a4c05f253f27c91afcee5949d7d2b *tests/fraq_interrupt_tests.R
09774244adcaefa69f63512e650e30bb *tests/fraq_prebuilt_tests.R
f638af55e98e80ef602a390116da5676 *tests/fraq_utils_tests.R
279c737c4f6618b0e84a6984ddef77f2 *vignettes/fraq_getting_started.Rmd
32472253381b9352eac7681098a9d6c5 *vignettes/plots/fig-qc-quicklook-1.png
325862a5414a703da7b3221e8ff339fb *vignettes/plots/fraq_flow_graph_mermaid.mmd
56c117d6aa3a25fa86970c54b06bb50c *vignettes/plots/fraq_flow_graph_mermaid.png
