62106b4b5b56a66ca804572a9a8b7d10 *DESCRIPTION
af6b1c885c0897659139a222b897c9f9 *NAMESPACE
d9a35991cdfafcf921edf070b4ffcd2c *R/AA_REDUCED.R
d5f488063f9ce713ec40582a94db05e4 *R/Add2DB.R
42ddfe42096337c7d22e86e01d342271 *R/AdjustAlignment.R
739befc8678e4ded766ea6f260eff029 *R/AlignDB.R
2ce418bc4315c9070d3fc2b22b341ff2 *R/AlignPairs.R
76038e0f94ca3d9f8b916c621dc9bb5c *R/AlignProfiles.R
43058b62a8dddafc9573379600b1c769 *R/AlignSeqs.R
b6fc045c8c0db04a227f53eaa5c9ff58 *R/AlignSynteny.R
b029c63f74586e5f808b4da02d676831 *R/AlignTranslation.R
c73227a48c77298b7f351c49a8dde0b3 *R/AmplifyDNA.R
616c349e63b4fee27d4a30dbebabd22b *R/Array2Matrix.R
021d1a0d30a0dfb6572f6e8533ec44ec *R/BrowseDB.R
1810c5b099045b98e5da2065896705ef *R/BrowseSeqs.R
48cbeb83a539c94bee003be6065a1e27 *R/CalculateEfficiencyArray.R
83e049b8474b10bb6796c3dc0a69fbe5 *R/CalculateEfficiencyFISH.R
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4b00d3997a7e509272ba9044879c692d *R/Clusterize.R
beda20635a4944a0202488d05357c84f *R/Codec.R
c2f1770e29672aed18a1313a97139e4d *R/ConsensusSequence.R
36ed5b3fadb8f2659efa861ae2652682 *R/Cophenetic.R
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4403e7e4202cb591fdbcd732d115386e *R/CreateChimeras.R
9d68803dca8a7bdb6f14aaced501e633 *R/DB2Seqs.R
1345fb5733c951dca34ff69b468df297 *R/DesignArray.R
49a966d654f0b83af8982d21937b8bff *R/DesignPrimers.R
517a2239b927006f5332589c5eb9fa6b *R/DesignProbes.R
cb9da9a5afed5a21d0331298f34e88b6 *R/DesignSignatures.R
8e134f3a1ca9b535bff4fd8e225b5732 *R/DetectRepeats.R
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0e9215640941b32541b93ef3f5a16138 *R/DistanceMatrix.R
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4679323a76e76cba3e891aae0b1460c4 *R/FindChimeras.R
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4f9ea76dd5750ee58581b1c4c4ed4029 *R/FindNonCoding.R
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0d3f55ee24f488280c7f775f27014e1e *R/Genes-class.R
1febcb3b469c1b96e55f50b20af9b750 *R/IdConsensus.R
a1420d742eb822e3cdb83e1ee03457c2 *R/IdLengths.R
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0e7eda4f99cd50d0b2aba1a6c7daff6f *R/IdentifyByRank.R
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6f474cecdf9714b8c85dc690c8823496 *R/InferDemography.R
0ee07ff6109fb83a2d3045974b489165 *R/InferRecombination.R
e55bf9dc3c512d6078e82f3e7dc25639 *R/InferSelection.R
54ffa3bcf48ab4a6a89e936b3c282bcd *R/InvertedIndex-class.R
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a6953965868cf10d2a72cc095761e378 *R/MapCharacters.R
5c396ea58c98cf2b53d67730e432679a *R/MaskAlignment.R
0af4b490786f8f562ee769d6d50c027c *R/MeltDNA.R
a8ad90448ac70a8ebea2638c11e65f9f *R/NNLS.R
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d82964798bf8cd561a912d852837ec63 *R/ReadDendrogram.R
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951359a9c56ee3a3128a528e82b98f04 *R/SearchDB.R
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4bb033cbdc21b5a3cd8e3fb32daa2b27 *R/Seqs2DB.R
e41e545a06f6aca8e68919c01a503816 *R/StaggerAlignment.R
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be736fa4400a6438374d8430f2c475a7 *R/Taxa-class.R
5091014a5ad50a3ca1f9e3f6cc3838bb *R/TerminalChar.R
77ea24528a63a83f3dde80bdb1169a9c *R/TileSeqs.R
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1d36413752e5449f8f5f9e62a72312fe *R/WriteGenes.R
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8b0ed7f4e384cde23de13faf5806c0eb *data/deltaSrulesRNA.RData
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49147204f1cd440626efd91495bbc594 *inst/extdata/Streptomyces_ITS_aligned.fas
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82852c0ee01ce4f33a408cd097064a88 *man/AlignDB.Rd
6a14549dbcd35f3092c6685d97fcf003 *man/AlignPairs.Rd
93bc601707b2ded2bcdfc04094ea0783 *man/AlignProfiles.Rd
2d2fb56c213ffa5fdcbf406d676c3884 *man/AlignSeqs.Rd
a39222cb6b93e4dd6663dfba712a5e10 *man/AlignSynteny.Rd
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6270874a28beea94d2eefc301e09bfb5 *man/AmplifyDNA.Rd
343a74cfeccc59985329ed945f876531 *man/Array2Matrix.Rd
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d5e13ef984ee5b4c35317824afa883b2 *man/BrowseDB.Rd
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a855120d1b587c94276c821572883914 *man/CalculateEfficiencyArray.Rd
969d5353e999eb627e840b3b419a3dd4 *man/CalculateEfficiencyFISH.Rd
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72446af3a08bebf8b5e7ce5186528580 *man/Clusterize.Rd
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2969d4114eebaed2bc3c007a981217bf *man/ConsensusSequence.Rd
4164ae3f2a30ec0a1363aeda0b52d0ca *man/Cophenetic.Rd
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6ee8fdd352d286fe2ba66f5c51346699 *man/DigestDNA.Rd
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8da4ac1099e9749008da9a37ca94dd5c *man/DistanceMatrix.Rd
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6b3bd7e2f1341508e31c0d4279d0a1ec *man/FindChimeras.Rd
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0a30cf619ba53ab182b820e29ea04bc4 *man/FindNonCoding.Rd
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dc6b541b0759e2ae62b4a5919dfdf70b *man/Genes-class.Rd
15bcab570101d93a380f56ea6842e5f3 *man/HEC_MI.Rd
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5e1d040a8a87ac3fe14a0e014e6373a0 *man/IdLengths.Rd
3ada9343426b99c84fe261d21e5835ef *man/IdTaxa.Rd
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75a06dc5d9cdba7d0ebe868e5a0c5fbe *man/IndexSeqs.Rd
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9f5fb2f07bc9c234b65323ad931b8f17 *man/InferSelection.Rd
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3864e4d123a528e944cee5779b01174a *man/NNLS.Rd
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2981936244dcbb83d2ba3ca8ee88e98b *man/PAM.Rd
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8be44b0216382230b54fb020f0b0db15 *man/PredictDBN.Rd
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4abec6dacb9d0c6cc14f9f10cb640ab8 *man/RESTRICTION_ENZYMES.Rd
83e87ba4b489a1428bbe3bb15d34fc11 *man/ReadDendrogram.Rd
1c6a6bfe6e4b2bd08287fc7caa7a4113 *man/RemoveGaps.Rd
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8d96b27826ef30c482b023fbb91252d1 *man/Seqs2DB.Rd
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8161a5e088289142999553db17b0dbc8 *man/Synteny-class.Rd
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25604ffc765ca489ffe6eacf754aada8 *man/TileSeqs.Rd
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8bf922e0c9bdc023a58be8369ea93081 *man/deltaGrules.Rd
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8291bef19f7334ba03df0924b9f5564f *man/deltaHrules.Rd
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cd93a449ed54304ee30f4be7e6feb3db *man/deltaSrules.Rd
3ac99eea1e2b3e5b5443ed724bff751d *man/deltaSrulesRNA.Rd
f829972981b989a8718554642861d505 *src/AlignProfiles.c
5549d0f667bb863c82cb18117f98d53b *src/AssignIndels.c
f1f4685a8f0afb74e19c344a86d86b22 *src/Biostrings_stubs.c
cfda851fefbb1cbba31215be0d634c04 *src/CalculateDeltaG.c
f56d64e18424c44acfb11a277bd72b21 *src/CalculateFISH.c
039892fde9ecc5449729e2b13f6336db *src/ChainSegments.c
57280d5b6e842ba09ef81ab89ac8a8c6 *src/Cluster.c
63e23a2102e455e7ee0cf283df7d745c *src/ClusterME.c
1ebb46a563cfcf0352ed99aa567f079d *src/ClusterML.c
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d819946ff25e223254e3f2f1ffb64804 *src/Compositions.c
43907de23885b45c9534f03afcfa76ce *src/Compression.c
3d4566484c31a28f1fbed2c40d7375af *src/ConsensusSequence.c
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