Changes in version 0.99.4                        

  - Addressing more points related t the Bioc review, mainly adopting
    camelCase naming for generics & methods

                       Changes in version 0.99.2                        

  - Addressed the points raised in the Bioc review

  - Expended the supported DEAs (as simple data.frame object that
    contains at least three columns named log2FoldChange, pvalue, and
    padj)

                       Changes in version 0.99.1                        

  - DeeDeeExperiment now extends the SingleCellExperiment class,
    accommodating both bulk and single-cell analysis workflows

  - Ready for Bioconductor review!

                       Changes in version 0.99.0                        

  - Ready for Bioconductor submission!

                        Changes in version 0.6.0                        

  - Full vignette now available for user guidance

                        Changes in version 0.5.0                        

  - Reducing the dependency stack to make the class/package as slim as
    it can be, with a focus on the full interoperability with SE
    (therefore now a full dependency)

                        Changes in version 0.4.0                        

  - New methods to rename DEA and FEA elements in dde objects, get all
    FEAs for a specific DEA, assign DEA to FEA

  - Method dispatch is now only base on x being DeeDeeExperiment, other
    arguments are no longer part of the method signature

  - expended supported FEAs: now takes results from topGO,
    clusterProfiler, enrichR, gProfiler, fgsea, gsea, DAVID, and output
    of GeneTonic shakers

                        Changes in version 0.3.0                        

New features

  - Methods to retrieve and manage the fea slot content are established

  - supported FEAs: topGO (data.frame) & enrichResult objects

  - A summary method is included to provide a quick overview of stored
    DEA and FEA results

                        Changes in version 0.2.0                        

New features

  - dea() has been refactored for clarity:
    
      - Now it returns only the main results table, acting as
        get_dea_df()
      - A new function, dea_info(), has been added to return additional
        information previously returned by dea()

  - Initial implementation of the fea slot

                        Changes in version 0.1.0                        

New features

  - The DeeDeeExperiment class is now being developed in its own
    standalone package, following its separation from the original
    DeeDee_legacy repository:
    https://github.com/imbeimainz/DeeDee_legacy