rBiopaxParser
This is the development version of rBiopaxParser; for the stable release version, see rBiopaxParser.
Parses BioPax files and represents them in R
Bioconductor version: Development (3.21)
Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.
Author: Frank Kramer
Maintainer: Frank Kramer <frank.kramer at informatik.uni-augsburg.de>
Citation (from within R, enter
citation("rBiopaxParser")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rBiopaxParser")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rBiopaxParser")| rBiopaxParser Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, Software |
| Version | 2.47.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 4.0), data.table |
| Imports | XML |
| System Requirements | |
| URL | https://github.com/frankkramer-lab/rBiopaxParser |
See More
| Suggests | Rgraphviz, RCurl, graph, RUnit, BiocGenerics, RBGL, igraph |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | AnnotationHub, NetPathMiner |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rBiopaxParser_2.47.0.tar.gz |
| Windows Binary (x86_64) | rBiopaxParser_2.47.0.zip (64-bit only) |
| macOS Binary (x86_64) | rBiopaxParser_2.47.0.tgz |
| macOS Binary (arm64) | rBiopaxParser_2.47.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rBiopaxParser |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rBiopaxParser |
| Bioc Package Browser | https://code.bioconductor.org/browse/rBiopaxParser/ |
| Package Short Url | https://bioconductor.org/packages/rBiopaxParser/ |
| Package Downloads Report | Download Stats |