matter
This is the development version of matter; for the stable release version, see matter.
Out-of-core statistical computing and signal processing
Bioconductor version: Development (3.21)
Toolbox for larger-than-memory scientific computing and visualization, providing efficient out-of-core data structures using files or shared memory, for dense and sparse vectors, matrices, and arrays, with applications to nonuniformly sampled signals and images.
Author: Kylie A. Bemis <k.bemis at northeastern.edu>
Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>
citation("matter")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("matter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("matter")| 1. Matter 2: User guide for flexible out-of-memory data structures | HTML | R Script |
| 2. Matter 2: Signal and image processing | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, DataRepresentation, DimensionReduction, Infrastructure, Preprocessing, Software |
| Version | 2.9.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
| License | Artistic-2.0 | file LICENSE |
| Depends | R (>= 4.4), BiocParallel, Matrix, methods |
| Imports | BiocGenerics, ProtGenerics, digest, irlba, stats, stats4, graphics, grDevices, parallel, utils |
| System Requirements | |
| URL | https://github.com/kuwisdelu/matter |
| Bug Reports | https://github.com/kuwisdelu/matter/issues |
See More
| Suggests | BiocStyle, knitr, testthat, plotly |
| Linking To | BH |
| Enhances | |
| Depends On Me | CardinalIO |
| Imports Me | Cardinal |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | matter_2.9.0.tar.gz |
| Windows Binary (x86_64) | matter_2.9.0.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/matter |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/matter |
| Bioc Package Browser | https://code.bioconductor.org/browse/matter/ |
| Package Short Url | https://bioconductor.org/packages/matter/ |
| Package Downloads Report | Download Stats |