biodbUniprot
This is the development version of biodbUniprot; for the stable release version, see biodbUniprot.
biodbUniprot, a library for connecting to the Uniprot Database
Bioconductor version: Development (3.21)
The biodbUniprot library is an extension of the biodb framework package. It provides access to the UniProt database. It allows to retrieve entries by their accession number, and run web service queries for searching for entries.
Author: Pierrick Roger [aut, cre] (ORCID:
Maintainer: Pierrick Roger <pierrick.roger at cea.fr>
citation("biodbUniprot")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("biodbUniprot")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biodbUniprot")| Introduction to the biodbUniprot package. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.13.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (3 years) |
| License | AGPL-3 |
| Depends | R (>= 4.1.0) |
| Imports | R6, biodb(>= 1.4.2) |
| System Requirements | |
| URL | https://github.com/pkrog/biodbUniprot |
| Bug Reports | https://github.com/pkrog/biodbUniprot/issues |
See More
| Suggests | BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, lgr, covr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | biodbUniprot_1.13.0.tar.gz |
| Windows Binary (x86_64) | biodbUniprot_1.13.0.zip |
| macOS Binary (x86_64) | biodbUniprot_1.13.0.tgz |
| macOS Binary (arm64) | biodbUniprot_1.13.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/biodbUniprot |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biodbUniprot |
| Bioc Package Browser | https://code.bioconductor.org/browse/biodbUniprot/ |
| Package Short Url | https://bioconductor.org/packages/biodbUniprot/ |
| Package Downloads Report | Download Stats |