biodbChebi
This is the development version of biodbChebi; for the stable release version, see biodbChebi.
biodbChebi, a library for connecting to the ChEBI Database
Bioconductor version: Development (3.21)
The biodbChebi library provides access to the ChEBI Database, using biodb package framework. It allows to retrieve entries by their accession number. Web services can be accessed for searching the database by name, mass or other fields.
Author: Pierrick Roger [aut, cre] (ORCID:
Maintainer: Pierrick Roger <pierrick.roger at cea.fr>
citation("biodbChebi")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("biodbChebi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biodbChebi")| Introduction to the biodbChebi package. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.13.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (3 years) |
| License | AGPL-3 |
| Depends | R (>= 4.1) |
| Imports | R6, biodb(>= 1.1.5) |
| System Requirements | |
| URL | https://github.com/pkrog/biodbChebi |
| Bug Reports | https://github.com/pkrog/biodbChebi/issues |
See More
| Suggests | BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, lgr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | phenomis |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | biodbChebi_1.13.0.tar.gz |
| Windows Binary (x86_64) | biodbChebi_1.13.0.zip |
| macOS Binary (x86_64) | biodbChebi_1.13.0.tgz |
| macOS Binary (arm64) | biodbChebi_1.13.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/biodbChebi |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biodbChebi |
| Bioc Package Browser | https://code.bioconductor.org/browse/biodbChebi/ |
| Package Short Url | https://bioconductor.org/packages/biodbChebi/ |
| Package Downloads Report | Download Stats |