StatescopeR
This is the development version of StatescopeR; for the stable release version, see StatescopeR.
StatescopeR framework for discovery of cell states from cell type-specific gene expression profiles inferred from bulk mRNA profiles
Bioconductor version: Development (3.24)
StatescopeR is an R wrapper around Statescope, a computational framework designed to discover cell states from cell type-specific gene expression profiles inferred from bulk RNA profiles.
Author: Mischa Steketee [aut, cre]
, Bauke Ylstra [ths]
, Yongsoo Kim [ths]
, KWF Kankerbestrijding [fnd]
Maintainer: Mischa Steketee <m.f.b.steketee at amsterdamumc.nl>
citation("StatescopeR")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("StatescopeR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Bayesian, GeneExpression, RNASeq, SingleCell, Software, Transcriptomics |
| Version | 1.1.0 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.6.0) |
| Imports | S4Vectors, SummarizedExperiment, reticulate, methods, SingleCellExperiment, matrixStats, scran, basilisk, Matrix, ComplexHeatmap, ggplot2, cowplot, utils |
| System Requirements | |
| URL | https://github.com/tgac-vumc/StatescopeR |
| Bug Reports | https://github.com/tgac-vumc/StatescopeR/issues |
See More
| Suggests | BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo, scRNAseq, scuttle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/StatescopeR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/StatescopeR |
| Package Short Url | https://bioconductor.org/packages/StatescopeR/ |
| Package Downloads Report | Download Stats |