Rqc
This is the development version of Rqc; for the stable release version, see Rqc.
Quality Control Tool for High-Throughput Sequencing Data
DOI: 10.18129/B9.bioc.Rqc
Bioconductor version: Development (3.21)
Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.
Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>
Maintainer: Welliton Souza <well309 at gmail.com>
citation("Rqc")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Rqc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rqc")| Using Rqc | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, QualityControl, Sequencing, Software |
| Version | 1.41.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
| License | GPL (>= 2) |
| Depends | BiocParallel, ShortRead, ggplot2 |
| Imports | BiocGenerics(>= 0.25.1), Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles |
| System Requirements | |
| URL | https://github.com/labbcb/Rqc |
| Bug Reports | https://github.com/labbcb/Rqc/issues |
See More
| Suggests | rmarkdown, testthat |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rqc_1.41.0.tar.gz |
| Windows Binary (x86_64) | Rqc_1.41.0.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/Rqc |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rqc |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rqc/ |
| Package Short Url | https://bioconductor.org/packages/Rqc/ |
| Package Downloads Report | Download Stats |