MDSvis
This is the development version of MDSvis; to use it, please install the devel version of Bioconductor.
Plots of Multi Dimensional Scaling (MDS) results
Bioconductor version: Development (3.23)
This package implements visulization of Multi Dimensional Scaling (MDS) results.
Author: Andrea Vicini [aut]
, Philippe Hauchamps [aut, cre]
, Shabnam Zaman [ctb]
, Laurent Gatto [aut]
Maintainer: Philippe Hauchamps <philippe.hauchamps at uclouvain.be>
citation("MDSvis")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MDSvis")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MDSvis")| Preparing input objects from a distance matrix and sample properties | HTML | R Script |
| Visualization of Multi Dimensional Scaling (MDS) objects | HTML | R Script |
| Reference Manual |
Details
| biocViews | DimensionReduction, FlowCytometry, MultidimensionalScaling, QualityControl, Software, Visualization |
| Version | 0.99.7 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | GPL-3 |
| Depends | R (>= 4.6) |
| Imports | CytoMDS(>= 1.3.5), rlang, ggplot2, plotly, shiny, shinyjs, methods |
| System Requirements | |
| URL | https://uclouvain-cbio.github.io/MDSvis |
| Bug Reports | https://github.com/UCLouvain-CBIO/MDSvis/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, HDCytoData, flowCore, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MDSvis_0.99.7.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | MDSvis_0.99.7.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MDSvis |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MDSvis |
| Bioc Package Browser | https://code.bioconductor.org/browse/MDSvis/ |
| Package Short Url | https://bioconductor.org/packages/MDSvis/ |
| Package Downloads Report | Download Stats |