CHRONOS
This is the development version of CHRONOS; for the stable release version, see CHRONOS.
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
Bioconductor version: Development (3.21)
A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.
Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos
Maintainer: Panos Balomenos <balomenos at upatras.gr>
citation("CHRONOS")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CHRONOS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CHRONOS")| CHRONOS | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology |
| Version | 1.35.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.5) |
| Imports | XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, igraph, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt, rJava |
| System Requirements | Java version >= 1.7, Pandoc |
| URL |
See More
| Suggests | RUnit, BiocGenerics, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CHRONOS_1.35.0.tar.gz |
| Windows Binary (x86_64) | CHRONOS_1.35.0.zip (64-bit only) |
| macOS Binary (x86_64) | CHRONOS_1.35.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CHRONOS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CHRONOS |
| Bioc Package Browser | https://code.bioconductor.org/browse/CHRONOS/ |
| Package Short Url | https://bioconductor.org/packages/CHRONOS/ |
| Package Downloads Report | Download Stats |