diggitdata

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see diggitdata.

Example data for the diggit package

Bioconductor version: 3.9

This package provides expression profile and CNV data for glioblastoma from TCGA, and transcriptional and post-translational regulatory networks assembled with the ARACNe and MINDy algorithms, respectively.

Author: Mariano Javier Alvarez

Maintainer: Mariano Javier Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("diggitdata")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("diggitdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diggitdata")

Using bcellViper	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Cancer, ExperimentData
Version	1.16.0
License	GPL (>=2)
Depends	R (>= 2.14.0), Biobase, methods
Imports	viper
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	diggit
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	diggitdata_1.16.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/diggitdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/diggitdata
Package Short Url	https://bioconductor.org/packages/diggitdata/
Package Downloads Report	Download Stats