KEGGdzPathwaysGEO
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see KEGGdzPathwaysGEO.
KEGG Disease Datasets from GEO
Bioconductor version: 3.9
This is a collection of 24 data sets for which the phenotype is a disease with a corresponding pathway in the KEGG database.This collection of datasets were used as gold standard in comparing gene set analysis methods by the PADOG package.
Author: Gaurav Bhatti, Adi L. Tarca
Maintainer: Gaurav Bhatti <gbhatti at med.wayne.edu>
Citation (from within R, enter
citation("KEGGdzPathwaysGEO")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("KEGGdzPathwaysGEO")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ExperimentData, GEO, MicroarrayData |
| Version | 1.22.0 |
| License | GPL-2 |
| Depends | R (>= 2.13.0) |
| Imports | Biobase, BiocGenerics |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | PADOG |
| Imports Me | GSEABenchmarkeR |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | KEGGdzPathwaysGEO_1.22.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/KEGGdzPathwaysGEO |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/KEGGdzPathwaysGEO |
| Package Short Url | https://bioconductor.org/packages/KEGGdzPathwaysGEO/ |
| Package Downloads Report | Download Stats |