EGSEAdata

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see EGSEAdata.

Gene set collections for the EGSEA package

Bioconductor version: 3.9

This package includes gene set collections that are used for the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing. It includes Human and Mouse versions of the MSidDB (Subramanian, et al. (2005) PNAS, 102(43):15545-15550) and GeneSetDB (Araki, et al. (2012) FEBS Open Bio, 2:76-82) collections.

Author: Monther Alhamdoosh, Yifang Hu and Gordon K. Smyth

Maintainer: Monther Alhamdoosh <m.hamdoosh at gmail.com>

Citation (from within R, enter citation("EGSEAdata")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EGSEAdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, Rattus_norvegicus_Data
Version	1.12.0
License	file LICENSE
Depends	R (>= 3.4)
Imports
System Requirements
URL

Suggests	EGSEA
Linking To
Enhances
Depends On Me
Imports Me	EGSEA
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EGSEAdata_1.12.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/EGSEAdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EGSEAdata
Package Short Url	https://bioconductor.org/packages/EGSEAdata/
Package Downloads Report	Download Stats