targetscan.Hs.eg.db
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see targetscan.Hs.eg.db.
TargetScan miRNA target predictions for human
Bioconductor version: 3.9
TargetScan miRNA target predictions for human assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.
Author: Gabor Csardi <Gabor.Csardi at unil.ch>
Maintainer: James F. Reid <james.reid at ifom-ieo-campus.it>
citation("targetscan.Hs.eg.db")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("targetscan.Hs.eg.db")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| LICENSE | Text |
Details
| biocViews | AnnotationData, FunctionalAnnotation |
| Version | 0.6.1 |
| License | file LICENSE |
| Depends | R (>= 2.7.0), methods, AnnotationDbi(>= 1.18.3) |
| Imports | methods, AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | BioCor, eisa, isomiRs |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | targetscan.Hs.eg.db_0.6.1.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Package Short Url | https://bioconductor.org/packages/targetscan.Hs.eg.db/ |
| Package Downloads Report | Download Stats |