ENCODExplorerData
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ENCODExplorerData.
A compilation of ENCODE metadata
Bioconductor version: 3.9
This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.
Author: Charles Joly Beauparlant [aut], Eric Fournier [aut, cre], Arnaud Droit [aut]
Maintainer: Eric Fournier <Fournier.Eric.2 at crchudequebec.ulaval.ca>
citation("ENCODExplorerData")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ENCODExplorerData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ENCODExplorerData")| Introduction to ENCODExplorerData | HTML |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | AnnotationData, AnnotationHub, CustomDBSchema, Homo_sapiens, Mus_musculus |
| Version | 0.99.1 |
| License | Artistic-2.0 |
| Depends | R (>= 3.6) |
| Imports | tools, jsonlite, RCurl, tidyr, data.table, methods |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/ArnaudDroitLab/ENCODExplorerData/issues |
See More
| Suggests | AnnotationHub, RUnit, BiocGenerics, knitr, curl, httr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ENCODExplorerData_0.99.1.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Package Short Url | https://bioconductor.org/packages/ENCODExplorerData/ |
| Package Downloads Report | Download Stats |