CHANGES IN VERSION 1.20.5 o fix the bug of score is NumericList. o add documentation for label.param.gp. CHANGES IN VERSION 1.20.4 o fix the bug in label.param.gp. CHANGES IN VERSION 1.20.3 o change the web application video address. CHANGES IN VERSION 1.20.2 o add citation. CHANGES IN VERSION 1.19.28 o fit the small size canvas. CHANGES IN VERSION 1.19.27 o add safe color theme. CHANGES IN VERSION 1.19.26 o update author info. CHANGES IN VERSION 1.19.25 o change save and load name for browseTracks. CHANGES IN VERSION 1.19.24 o add save and load for browseTracks. o add swith dandelion height method (mean or count) for browseTracks. CHANGES IN VERSION 1.19.23 o add color picker for pie.stack for browseTracks. CHANGES IN VERSION 1.19.22 o fix the bug in legend for browseTracks. CHANGES IN VERSION 1.19.21 o fix the bug of that can not set color for undefined for browseTracks. CHANGES IN VERSION 1.19.20 o fix the bug of lable is not saved for browseTracks. CHANGES IN VERSION 1.19.19 o fix the bug of output svg for browseTracks. CHANGES IN VERSION 1.19.18 o add rotate 45 in color picker for browseTracks. CHANGES IN VERSION 1.19.17 o add apply to all in color picker for browseTracks. CHANGES IN VERSION 1.19.16 o fix the grammar in vignettes. CHANGES IN VERSION 1.19.15 o update vignettes. CHANGES IN VERSION 1.19.14 o update undo for browseTracks. CHANGES IN VERSION 1.19.13 o add undo for browseTracks. CHANGES IN VERSION 1.19.12 o add remove all guideline function. CHANGES IN VERSION 1.19.11 o fix the fonts bug for export png in browseTracks CHANGES IN VERSION 1.19.10 o remove all svgs before browseTracks CHANGES IN VERSION 1.19.9 o Build shiny output objects for browseTracks CHANGES IN VERSION 1.19.8 o add dandelion plots to browseTracks CHANGES IN VERSION 1.19.7 o fix a bug in track class o improve one-step visualization for browseTracks CHANGES IN VERSION 1.19.6 o improve one-step visualization for browseTracks o try to avoid the error caused by VariantAnnotation CHANGES IN VERSION 1.19.5 o improve one-step visualization for browseTracks CHANGES IN VERSION 1.19.4 o add one-step visualization for browseTracks CHANGES IN VERSION 1.19.3 o adjust y label position for viewTracks CHANGES IN VERSION 1.19.2 o adjust legent position for dandelion.plot CHANGES IN VERSION 1.19.1 o add featureLayerID to dandelion.plot CHANGES IN VERSION 1.17.8 o fix the bug in figure captions of vignette. CHANGES IN VERSION 1.17.7 o allow ylim of tracks be not fixed from 0. CHANGES IN VERSION 1.17.6 o fix a issue of circle in lollipop plot. CHANGES IN VERSION 1.17.4 o add flag type in lollipop plot. CHANGES IN VERSION 1.17.3 o adjust plot position for dandelion.plot. CHANGES IN VERSION 1.17.2 o add Yscales for dandelion.plot. CHANGES IN VERSION 1.17.1 o add smooth function for tracks. CHANGES IN VERSION 1.15.13 o add feature.gr parameter to plotGInteractions. CHANGES IN VERSION 1.15.12 o add new function plotGInteractions. CHANGES IN VERSION 1.15.11 o update the title CHANGES IN VERSION 1.15.10 o Change all "class" function to "is" function. CHANGES IN VERSION 1.15.9 o Add lollipopData to tracks-class. CHANGES IN VERSION 1.15.8 o Plot lollipop plot with tracks. CHANGES IN VERSION 1.15.7 o Add new parameter rescale to lolliplot. CHANGES IN VERSION 1.15.6 o Add new function geneTrack. CHANGES IN VERSION 1.15.5 o fix the warning in windows documentation. CHANGES IN VERSION 1.15.4 o fix the warning in windows documentation. CHANGES IN VERSION 1.15.3 o fix the position of ylabs in plotOneIdeo. CHANGES IN VERSION 1.15.2 o fix the bug in addGuideLine and viewTracks when plot tracks with breaks. CHANGES IN VERSION 1.15.1 o fix the bug in dandelion.plot o use Roxygen2 to generate help documents o add new functions: getLocation, viewGene CHANGES IN VERSION 1.13.11 o fix the bug maxgap could not be less than 0 in findOverlaps CHANGES IN VERSION 1.13.10 o fix the bug documentation of ideogramPlot is different from the codes. CHANGES IN VERSION 1.13.9 o fix the bug when using findOverlaps, when 'type' is "any", at least one of 'maxgap' and 'minoverlap' must be set to its default value CHANGES IN VERSION 1.13.8 o automatic set the font size in ideogramPlot CHANGES IN VERSION 1.13.7 o fix the bug in ideogramPlot when data range is identical for heatmap layout. CHANGES IN VERSION 1.13.6 o add draggable tracks in browseTracks function CHANGES IN VERSION 1.13.5 o add arrow tools in browseTracks function CHANGES IN VERSION 1.13.4 o add label tools in browseTracks function CHANGES IN VERSION 1.13.3 o fix bugs in browseTracks function CHANGES IN VERSION 1.13.2 o add more columns to GRoperator function o add browseTracks function CHANGES IN VERSION 1.11.8 ----------------------- o support break x-axis for viewTracks. CHANGES IN VERSION 1.11.7 ----------------------- o improve the ideogramPlot function. CHANGES IN VERSION 1.11.6 ----------------------- o improve the ideogramPlot function. CHANGES IN VERSION 1.11.5 ----------------------- o add ideogramPlot function. CHANGES IN VERSION 1.11.4 ----------------------- o remove the blank bottom space for lolliplot. CHANGES IN VERSION 1.11.3 ----------------------- o fix a bug when tracks has multiple max values. CHANGES IN VERSION 1.11.2 ----------------------- o add jitter label only for lolliplot. CHANGES IN VERSION 1.11.1 ----------------------- o adjust the x postion of lolliplot. CHANGES IN VERSION 1.9.14 ----------------------- o add controls for lolliplot yaxis. CHANGES IN VERSION 1.9.13 ----------------------- o the height of features could be unit object. CHANGES IN VERSION 1.9.12 ----------------------- o Update the vignette. o Fix the position of ylab. CHANGES IN VERSION 1.9.11 ----------------------- o Add caterpillar layout to lolliplot. CHANGES IN VERSION 1.9.10 ----------------------- o Fix the bug that if the features is outside of granges for lolliplot. CHANGES IN VERSION 1.9.9 ----------------------- o Fix the bug that no xscale is drawn when there is no positive value for track 1. CHANGES IN VERSION 1.9.8 ----------------------- o lolliplot could accept multiple features for one layer. CHANGES IN VERSION 1.9.7 ----------------------- o lolliplot could accept multiple types for multiple layers. CHANGES IN VERSION 1.9.6 ----------------------- o fix the bugs for the lolliplot when the last snp need to be jittered. CHANGES IN VERSION 1.9.5 ----------------------- o fix the bugs in the documentation. CHANGES IN VERSION 1.9.4 ----------------------- o add pie.stack layout for lolliplot. CHANGES IN VERSION 1.9.3 ----------------------- o add controls for lolliplot labels. CHANGES IN VERSION 1.9.2 ----------------------- o update documentation to include the how to set ylim. CHANGES IN VERSION 1.7.9 ----------------------- o fix the bug that legend write to outside. CHANGES IN VERSION 1.7.8 ----------------------- o fix the typo in documentation. o update the lollipop plot. CHANGES IN VERSION 1.7.7 ----------------------- o add dandelion plot function. CHANGES IN VERSION 1.7.6 ----------------------- o add legend for lollipop plot. CHANGES IN VERSION 1.7.5 ----------------------- o add lables in the nodes of lollipop plot. CHANGES IN VERSION 1.7.4 ----------------------- o Update documentation. CHANGES IN VERSION 1.7.3 ----------------------- o add Y axis to lollipop plot. CHANGES IN VERSION 1.7.2 ----------------------- o add lollipop plot! CHANGES IN VERSION 1.7.1 ----------------------- o adjust the fontsize for optimizing styles with theme. o add gene symbols if possible for geneModelFromTxdb. CHANGES IN VERSION 1.5.6 ----------------------- o update documentation. o add new feature for optimizing the styles with theme. CHANGES IN VERSION 1.5.5 ----------------------- NEW FEATURES o remove interactiveViewer from the package. BUG FIXES o No changes classified as 'bug fixes' (package under active development) CHANGES IN VERSION 1.5.4 ----------------------- NEW FEATURES o parse2GRanges function to parse text into GRanges BUG FIXES o No changes classified as 'bug fixes' (package under active development) CHANGES IN VERSION 1.5.3 ----------------------- NEW FEATURES o export importData function to import data to RleList. BUG FIXES o No changes classified as 'bug fixes' (package under active development) CHANGES IN VERSION 1.5.2 ----------------------- NEW FEATURES o Add GRanges operators: +, -, *, / o export parseWIG function. BUG FIXES o No changes classified as 'bug fixes' (package under active development) CHANGES IN VERSION 1.3.4 ----------------------- NEW FEATURES o No changes classified as 'new features' (package under active development) BUG FIXES o improve efficiency of importScore CHANGES IN VERSION 1.3.3 ----------------------- NEW FEATURES o could flip the x-axis if needed BUG FIXES o improve efficiency of interactiveViewer CHANGES IN VERSION 1.3.2 ----------------------- NEW FEATURES o No changes classified as 'new features' (package under active development) BUG FIXES o fix bugs in importScore when format=="BigWig" CHANGES IN VERSION 1.3.1 ----------------------- NEW FEATURES o add new function plotGRanges for quick view GRanges data o add ranges when importScore BUG FIXES o No changes classified as 'bug fixes' (package under active development) CHANGES IN VERSION 1.1.1 ----------------------- NEW FEATURES o addArrowMark with label BUG FIXES o No changes classified as 'bug fixes' (package under active development)