sigaR
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sigaR.
Statistics for Integrative Genomics Analyses in R
Bioconductor version: 3.9
Facilitates the joint analysis of high-throughput data from multiple molecular levels. Contains functions for manipulation of objects, various analysis types, and some visualization.
Author: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>
Maintainer: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>
citation("sigaR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sigaR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sigaR")| sigaR | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Pathways, Software, aCGH |
| Version | 1.32.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12 years) |
| License | GPL (>= 2) |
| Depends | Biobase, CGHbase, methods, mvtnorm |
| Imports | corpcor (>= 1.6.2), graphics, igraph, limma, marray, MASS, penalized, quadprog, snowfall, stats |
| System Requirements | |
| URL | http://www.few.vu.nl/~wvanwie |
See More
| Suggests | CGHcall |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sigaR_1.32.0.tar.gz |
| Windows Binary | sigaR_1.32.0.zip |
| Mac OS X 10.11 (El Capitan) | sigaR_1.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/sigaR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sigaR |
| Bioc Package Browser | https://code.bioconductor.org/browse/sigaR/ |
| Package Short Url | https://bioconductor.org/packages/sigaR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |