sRAP
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sRAP.
Simplified RNA-Seq Analysis Pipeline
Bioconductor version: 3.9
This package provides a pipeline for gene expression analysis (primarily for RNA-Seq data). The normalization function is specific for RNA-Seq analysis, but all other functions (Quality Control Figures, Differential Expression and Visualization, and Functional Enrichment via BD-Func) will work with any type of gene expression data.
Author: Charles Warden
Maintainer: Charles Warden <cwarden45 at gmail.com>
citation("sRAP")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sRAP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sRAP")| sRAP Vignette | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, GO, GeneExpression, GeneSetEnrichment, Microarray, Preprocessing, QualityControl, RNAseq, Software, Statistics, Visualization |
| Version | 1.24.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL-3 |
| Depends | WriteXLS |
| Imports | gplots, pls, ROCR, qvalue |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sRAP_1.24.0.tar.gz |
| Windows Binary | sRAP_1.24.0.zip |
| Mac OS X 10.11 (El Capitan) | sRAP_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/sRAP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sRAP |
| Bioc Package Browser | https://code.bioconductor.org/browse/sRAP/ |
| Package Short Url | https://bioconductor.org/packages/sRAP/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |